Pyrenophora tritici-repentis: 6338758
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Entry
6338758 CDS
T10215
Symbol
PtrM4_011050
Name
(RefSeq) CDC9, ATP-dependent DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03030
DNA replication
ptrr03410
Base excision repair
ptrr03420
Nucleotide excision repair
ptrr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
6338758 (PtrM4_011050)
03410 Base excision repair
6338758 (PtrM4_011050)
03420 Nucleotide excision repair
6338758 (PtrM4_011050)
03430 Mismatch repair
6338758 (PtrM4_011050)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptrr03032
]
6338758 (PtrM4_011050)
03400 DNA repair and recombination proteins [BR:
ptrr03400
]
6338758 (PtrM4_011050)
Enzymes [BR:
ptrr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
6338758 (PtrM4_011050)
6.5.1.6 DNA ligase (ATP or NAD+)
6338758 (PtrM4_011050)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
6338758 (PtrM4_011050)
DNA replication proteins [BR:
ptrr03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
6338758 (PtrM4_011050)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
6338758 (PtrM4_011050)
DNA repair and recombination proteins [BR:
ptrr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
6338758 (PtrM4_011050)
NER (nucleotide excision repair)
Other NER factors
6338758 (PtrM4_011050)
MMR (mismatch excision repair)
Other MMR factors
6338758 (PtrM4_011050)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
6338758
NCBI-ProteinID:
XP_001931080
UniProt:
B2VSW3
LinkDB
All DBs
Position
1:complement(<2747957..>2750826)
Genome browser
AA seq
908 aa
AA seq
DB search
MPPKQATLGKFFGKANGDGAKQQSKLSFSTKPKPMKKEELQPSPEDVKTEQKDEVDSDAD
VKAPAKEEVEADGDAMEVDSTTSETGKKRQIKEEEEEVDSEEEPPSKRQRRKPSEDKEKP
KKKTAAKPKAEKSTAKSKKVTTKSSSVDPEDGDVSAPTKVAKGKKKAATKPKAAEVDSDE
ASAPAKVAKGRKKEIENSPAPAEDEVDSNKEEEDVLSSEEEEVKVKARKQVQTTLTSNTK
DPYPDWKPGEPVPYAALCTTFSKIEMTTKRLEILAHCSLFLRQVLRLTPKDMLPTVMLMV
NKLAADYAGIELGIGESLIMKAVSESTGRNLQQIKTDQNEIGDLGLVAAKSRSKQPTMFK
PKALTVEGVRKGLMGIAIVEGQGAQGRKVDGIKKLLSAADAHNSGKAIDIEKDKGGPSEA
KFIVRTLEGKLRLGLAEKTVVVAVAQAMIFHEMSLEGKTPSTTDLAKAEAMLKTVYSELP
SYEVIIPAMLEHGIMNLRENCRLQPGVPLKPMLAKPTKSITEVLDRFEGKDFTCEYKYDG
ERAQIHFVAHDADMELATAAPTAGKSDRGVSNIFSRNSEDLSKKYPDILAKLPTWVKEGT
KSFVLDCETVAWDMVEKKVLPFQQLMTRKRKDVKVEDVKVKVCVFAFDLLYLNGEALVTK
SFRERREHLNEAFIPVEGEFALAKFGNTNELEEIQTLLEDSVKEGCEGLMVKMLDGPESF
YEPSKRSQNWLKVKKDYLAGVGDSLDLVVLGAYYGKGKRTSWYGAFLLACYNPKTEKYET
VCNIGTGFSEAILESLHKTLSEIVIDRPKPFYTHSTGNKDQPDVWFEPRYVWEVKTADLT
LSPRYKAAADEVGGGGKGVSLRFPRFIKERDDKKPDEASSSRMIAEMYQRQESVGNNKGP
SADDDFEY
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgccgcctaagcaggctactcttggaaagttcttcggcaaggccaacggcgacggagcg
aagcagcaatccaaattgtcattctccaccaaacccaagcccatgaagaaggaggagcta
caaccttcaccagaagatgtgaagacggaacagaaagacgaagtcgattccgatgcagac
gtcaaggcaccagccaaggaagaggtagaagccgacggcgacgccatggaggttgacagt
acgacgtctgagactgggaagaagagacaaatcaaagaggaggaggaggaagtagattca
gaagaggagccaccgtcgaagcgtcaacggaggaagcctagtgaggataaggagaaacca
aaaaagaagacagctgcgaagccaaaggccgaaaagtcgactgcgaaatccaaaaaagtg
actacgaagtctagttccgtagatccagaagacggggacgtctctgcgccgacaaaggta
gcgaagggcaagaagaaagccgctaccaaacccaaggccgctgaggtggacagcgacgag
gcatcggcacctgcaaaagttgcaaagggcagaaaaaaagagattgaaaattcaccagca
ccagcagaggatgaagtcgactcgaacaaggaggaagaggatgtgcttagctcagaggaa
gaagaggtcaaggtcaaggcacgaaagcaagtacaaactacacttacttccaacaccaag
gacccatacccggactggaaaccaggcgagccagtgccgtacgccgcactctgcacaacc
ttctcaaagattgagatgactacaaagcggttagaaatcttggcacactgttcgttattc
ctacgacaagtattgcgattaacaccaaaagatatgctgccaactgttatgctcatggtt
aacaagctcgcagccgactacgcaggtatcgaactcggtatcggcgagtctttgatcatg
aaggctgtgtctgagagtactggaagaaatctacaacagatcaagactgaccagaacgag
attggcgatctgggtctggtcgcagcaaagagccgatccaagcagccaaccatgttcaag
cccaaggcgttgacagtggagggtgtgcgtaaaggcctgatgggcattgccattgtagag
gggcaaggtgctcaagggcgcaaagttgacggcatcaagaagttgttgtcggcagcagat
gcgcataactccggaaaggccatcgacatcgagaaggacaagggtggtccaagtgaggcc
aagttcattgtacgaacactagaaggcaagcttcgattgggtcttgccgagaagactgtg
gtggtggctgttgcacaggccatgatcttccatgagatgtctctggaaggcaagacaccg
tcgacaacagatttggcaaaagcagaagccatgctgaagactgtctacagcgagcttccc
agctacgaagtcatcattccagcaatgctcgagcatggcataatgaacctgcgggagaac
tgccgcctacagcccggtgttccgctcaagcctatgcttgccaagccaacaaaatcaatt
acggaggtactagatcgtttcgaaggcaaagacttcacatgcgagtacaagtacgatgga
gagcgcgcccagatacatttcgttgctcatgatgcagacatggaattggcgaccgcagct
cccactgctggtaagagtgatcgtggcgtatcaaacatcttctccagaaactccgaggac
ttgtcaaagaagtaccctgatatccttgccaagttaccaacttgggtcaaagaaggcacg
aagagctttgtgctggattgtgagactgttgcgtgggacatggtggagaagaaggtgttg
cctttccagcagctcatgacacgcaagaggaaggatgtcaaggttgaggatgttaaagtc
aaggtctgcgtctttgcctttgatctactctacctgaatggtgaggcacttgtaaccaag
tctttccgcgagcgtcgcgagcacctcaacgaagccttcatccccgttgaaggagaattt
gctctcgccaaattcggcaacaccaacgagctagaagagattcaaacgctcctcgaagac
tctgtcaaagagggctgcgaaggtctcatggtcaagatgctcgacggcccagaatccttc
tacgagccctcgaagcgatcgcaaaactggctcaaagtgaagaaagactacctcgctggt
gtcggagactccctcgatctcgtggtgctaggagcctactacggcaaaggcaagcgcaca
agctggtacggcgccttcctcctcgcctgttacaaccccaagacggaaaaatacgaaaca
gtctgcaacatcggtacaggcttctccgaagccatactcgaatccctccacaagacgctt
tccgaaatcgtaatcgaccgcccgaagcccttttacacgcattcaacgggcaataaggat
cagcccgacgtctggtttgagcctagatatgtctgggaagttaagacggcggatcttacg
ctcagtcccaggtacaaggcggccgctgacgaagtgggtgggggtggcaaaggtgtgagt
ttgaggtttccaagattcatcaaggagagagatgataagaagcctgatgaggcaagctcg
agtcgtatgattgccgagatgtatcagaggcaagagagtgtaggaaacaataaaggaccg
agcgctgacgacgattttgagtactga
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