Pyrenophora tritici-repentis: 6339149
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Entry
6339149 CDS
T10215
Symbol
PtrM4_018790
Name
(RefSeq) RNA polymerase II transcription factor
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03022
Basal transcription factors
ptrr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
6339149 (PtrM4_018790)
09124 Replication and repair
03420 Nucleotide excision repair
6339149 (PtrM4_018790)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptrr03021
]
6339149 (PtrM4_018790)
03400 DNA repair and recombination proteins [BR:
ptrr03400
]
6339149 (PtrM4_018790)
Transcription machinery [BR:
ptrr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
6339149 (PtrM4_018790)
DNA repair and recombination proteins [BR:
ptrr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
6339149 (PtrM4_018790)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
6339149
NCBI-ProteinID:
XP_065965539
UniProt:
A0A2W1F5F1
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Position
1:complement(4758261..4760284)
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AA seq
638 aa
AA seq
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MTDAAAQYKKQDGIVSVSADGKTVTWKSASGALPPLSIAIADIGNLQQTPATSAKASIKI
VVKEPSPQTGNHTFTFTSTAARNDQQNITSLLRKWIEASKQQSDNGASAAMAMAQTVTAA
GKDKEETYEDAKLLADTALQMSLLNSSPALRQRFDRALLEKPESVGVLQFSMQFWSTRVH
MLRSHATERSQTTGTYNVLSVIKSKSVNGTLMLNLTKEQIELLFRQHPIVQKAYNENVPQ
LSEGDFWERFFHSRLMKKLKGERIQDKDVSDPKLDKYLTYDEAADSSQDLLASSIPNFIN
IEANENNHSQKQGNRPDFTMNPSNYEKAPILRVLNRMSEKMMKDVPPSDTSRHGPVGLDE
QTYKELRLRDLQLADDDNRVVLKVHDQSRFFSAGQSVHTSTSAATYTKRTPAEALSTLQK
DLRKFDEHNGRSSTVDLHSIIDINDESSSDEEGPAPKKTKVGSKSSRSAASSQVLTAVRK
RHLHNDDLSSSNSISTSERAKELDVSEVILDDLTMTHNTTVEFLHYFWAVFYSGDPDRAN
EIARLIETLDKSLDRIKAVADRAEADRVARIEQARRENELSNQRERKKRRFDPEAIKGGK
QAINQIVDPLLRAIDAARGQYQKALQEQIARNSANTTA
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgccgcggctcagtacaagaagcaggatggcatcgtctctgtgtctgccgat
ggcaaaacagtgacctggaagtctgccagcggtgcgcttcctccgctgtccatagccata
gcagacattggaaatctccagcagacgcccgctacctcggccaaagcctccataaagatt
gtcgtaaaggagccatcaccgcaaaccggaaaccacacttttaccttcacctccacggcc
gctcgcaatgatcagcagaacataaccagcctgttgcgcaagtggattgaggcttccaaa
cagcaaagcgacaatggcgcatcggctgccatggctatggcccagaccgtgacggcagct
ggcaaggacaaggaggagacgtacgaggatgcaaagctactcgctgatactgcgcttcaa
atgtcactgctcaactcgagcccagcacttcgtcaacgcttcgatcgtgctctcttggag
aaacccgagtctgtcggcgtcttgcaattttctatgcagttctggtctactcgcgtgcac
atgttgaggtcacatgcgacggagagatcgcagactaccggaacatacaacgtcttgtcc
gttatcaagtcaaagtcagtcaatggcactctgatgctaaacttgacaaaagagcaaatt
gagctccttttcaggcagcaccccatagttcagaaagcctacaacgagaatgttccccaa
ctgagcgaaggcgatttctgggagagattctttcacagtcgcttaatgaaaaaactaaag
ggcgagcgcatccaagataaggatgtgtccgacccgaagctcgacaaatatctgacttat
gatgaggcagcagatagttcccaggacctgcttgcttcttccattcccaacttcatcaat
attgaggcaaacgaaaacaatcatagtcagaagcagggcaaccgacccgacttcaccatg
aacccatccaattacgagaaagcacccatcctccgagtcctgaatcgtatgagcgagaaa
atgatgaaggatgtcccaccttccgacacgagtcggcatggtccagttgggctcgatgag
cagacctacaaggagttacggttgcgtgacttgcagcttgccgacgatgacaacagggtt
gttctcaaagtacatgatcagagccgattcttctccgcaggccagagcgtacacacgtct
acgagtgctgcgacatatacgaagcgtacacctgctgaggcactttctactctgcagaag
gatcttcgcaagttcgacgagcataatggtcgctcttcgaccgttgatctccattccata
atcgacatcaacgatgaaagcagtagtgatgaggagggtcctgctcccaagaagacaaag
gttgggagcaaatcttcgcgcagtgcagcctcttcacaggttctgactgctgttcgaaaa
cggcatctgcacaatgacgacctgtcatcctcaaactctatatctacaagtgaacgagcc
aaggagctagatgtttccgaagtgatacttgacgatcttaccatgacacacaacaccact
gtcgagtttctccattacttctgggcggtattttattcgggggatccagatcgcgccaac
gagattgcacggctcattgagacactggataagtcgctcgaccgcatcaaggctgtagcc
gatagggcagaggcagacagggtggccagaatcgagcaagcacgcagagaaaacgagctg
tccaatcaacgagagagaaagaaaagaagattcgatcctgaggccatcaagggtgggaaa
caagccattaatcaaatcgtggatcctctgcttcgagcgatcgatgcggcgcggggtcaa
taccaaaaagcactacaggaacagatagcgcgcaattccgcgaacacaactgcatga
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