Pyrenophora tritici-repentis: 6339247
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Entry
6339247 CDS
T10215
Symbol
PtrM4_015080
Name
(RefSeq) Tho2 multi-domain protein
KO
K12879
THO complex subunit 2
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03013
Nucleocytoplasmic transport
ptrr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
6339247 (PtrM4_015080)
09122 Translation
03013 Nucleocytoplasmic transport
6339247 (PtrM4_015080)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6339247 (PtrM4_015080)
03041 Spliceosome [BR:
ptrr03041
]
6339247 (PtrM4_015080)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
6339247 (PtrM4_015080)
Spliceosome [BR:
ptrr03041
]
Complex C
Other components
EJC/TREX
6339247 (PtrM4_015080)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
6339247 (PtrM4_015080)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
THOC2_N
Tho2
Thoc2
VF_A0006
Motif
Other DBs
NCBI-GeneID:
6339247
NCBI-ProteinID:
XP_065965367
LinkDB
All DBs
Position
1:complement(<3809948..>3816859)
Genome browser
AA seq
2253 aa
AA seq
DB search
MSPPANPFPTTRPSQPAPSAPAPAPVTAPPTTRPSTPSSPRDVPGSNEFLTPDRVAHWNG
EARDAVVKAAISAQADGDALTLAVIFHEIIEASMHCLLDAGELGSIVRDIVSAPSNELVD
PVSTFLDTLGSLTQDEGKQALVRQMLVATDIDLSRMRSELENDLLKSLGLVRDSFSKMAV
RKATHALYRQSNYNLLREESEGYSKLMTEYFTTVNSEPPTQEVVSETYQRVNALIGAFDL
DIGRVLDVTLDVFASLLVKHGKFFVKMLRTSAWWPQLRGFDGIEWEEPEVPTLPQWAQPD
SKQWYYSEEEKEEQLRLRESRDRKFWQRVGELGDRAGIQAFFELGARRITTNKRQPDQTL
PAEGAPLSKQQAARKWADEWMEQTKTLPPPGNDIAAQLLGFKLQFYASDSRDAGDNLPEN
LMYLIALLIKIEEDMPAHKEKLFKAKRQKEEQEGGAVLNALTMAGALPDDTPGQPAVSRL
RDAESRPKSDSGRNTPAKPDESGDKTKDLPEARDQKYTLLKSLLCIGALPEALFILGRHP
WFLEVYPELLDLIFRLAHHSLSKVYEATKPTSAERPFIATKGAGVRGPSKPTDFVPRRPL
RWAKADTKDMDGGIDYKFYWEDWVDNVPVCQEVDDVMKLCSTLLGLVGAECGKDVVLLTK
IVRIGKKSLADDPSDANRKRWINFSTTFIAPAITFTGRNPAVINEVWDLFKSFDTATRYT
IYQQWFSGMLKPAVKTAFQKIQVETRQTLSRISATNTKDYGRKIAKISHASPGIVFERTV
KQLVNYPNMINVLVECSRYLTLLGYDVLTWTLVTYLRNPNKGSQQDDGMLSAPWLKNIAT
FVGRVYAEYRLMDATPVLQLIAHQLLCSEGELYMLDVLEQMVKSMGGISFSGSVSESMNL
ALSGGPQLRTFILSHRLADDRHKAGVPARRLIKWLKETGLGPQILIALAQHVEAYVHRED
QQEVPDKPVLFNVDKLRSNLLHFLELLRAYISVDEFDTIFPSLIEMMAEFHVEPDVAFTI
ARASIATKASAFRAAQRTKLITDNETNGDTSMSGVGNSSLTNGTGATDAKTTKAAEDVEM
KDSAPSTDAVIGEGDAAASTVAREEKPDVPNLEIEKLATQLKQHMPDTFGQHPCLSFYIT
FWQLYLRDVDIDGINQQYKETIAYLERRIPAPPPERRGGYRPNVPKPDTAEVRNAKADIA
QLREEQQVFITAKAATQDSLRAELGRWFDGVPMIGPQCDALHNALLQDCFIPRSRMSLED
AQYASSMLMFMHSSGVPGFRMSRLLDVLFNSNKLMAMISMFTEGEASSFGRFLSDILREL
QIWHANKNDAYVKNAHGPEQNLPGFGRSYNTERNATTFFPYEQFCMVLFKWHKALTTALK
ACLESGSYMQMRNAINVLHALGGTFPKVVTLGTELKQTIQALEETEEREDLKKALQSILG
PVTKGEKSWLEEHVFRNTTAPPPAPGSTTNASDKAAPEKGKTPQPHDSKPNATALTSNPK
SEPNGTQRTPARDDNGSKRGVPNPATPVPLRDREPVQSSRLSEARPSTPSQQENGVGRST
SKPGPPMHPSSVPPRPDSRNTPTQPTSVGRPSHALPSRPDTQPSRTRQPERPLTERPLTE
RPLEGGHSRYDNRGHPAEYGRLDRSGDPARQREASPGRRARLPGGRTPERMPAGADHREW
SGRERDYEDRALRPMPRDTRAPPVRPPPTWDPRDARDPRDSRDPRDLRDQRERSEPRGHA
PLPIMDARRMPSNSSLANEYRRDGPPPNASYGSEQSDRHSRAPPAPIPAKEEPTVNPARA
ALINQVEHGRHEPPRSDRDNRREREPRLNSPRHGEDRRGEDRRVDERPPSYHGRSDVPRE
VRDERPIPPSGNRDRREEPAASAPTGPRSGRNESSSSRASREMFQPASGPRSSGHQVQDP
NYGRLNQPSEPAPPSGPRSDRPHSQPQPPTPTAPTGPAASLPAGIHPSRLVNIEGRPPSG
PPLQTNIPNAPSGPRGSNRAPQGPIPSSPGGRGPPTGPAAADRGSRNAGNPLRAINNVLT
GNAPADRSSERIAPPPNPPVRGRGASRANGPVEGSGGMPSPMPPPAHASTPNRVENQHPR
SSRNDDIPSRPDGIPLEEGRSESRSHRDSRRSERSGRERSSPERSERRPDERSSRTAPSD
RPEGERGGREKRGGDRETSRRDREREGESRSAREPRESSRRERGTREDGGRTSGREDRDR
RSRGGGGSSGVDDGRKRGRDPQDQAHGDVKRRR
NT seq
6762 nt
NT seq
+upstream
nt +downstream
nt
atgtctccacctgcaaacccgttcccgacgacaaggccatcgcaaccagcaccttctgcg
cccgcgcccgcgcctgtgaccgcgccgccaaccacacgaccctcgacaccgtcttcaccg
cgcgacgtccccgggagcaatgagtttttgacaccggaccgcgtcgctcactggaatggc
gaagcacgcgacgctgtagtgaaggctgccatatccgcccaggcagacggcgatgcgctc
acgcttgcagtcatctttcacgagattatcgaagcgtccatgcactgcctattggatgct
ggcgagttgggttcgatagtccgcgacatcgtctctgctccttcaaacgagctagtcgac
cccgtatcgacgttcctcgacacgctgggttcgctcacacaagatgagggcaaacaagct
cttgtacgtcagatgcttgttgcgaccgacatcgacttgtcgcgcatgcgctccgagctg
gaaaatgatctcctcaagtccctgggcctagtccgcgacagcttcagcaagatggcagtc
cggaaggcaacgcatgctctgtatcgacagtccaactacaacctgctgcgcgaagagagc
gaaggctactccaagctcatgactgagtactttaccacagtaaacagcgaaccgcctaca
caggaagtcgtgagcgagacttaccagcgagtgaacgcacttatcggcgcattcgatctg
gacattggcagagtcctcgatgtgacactggatgtgtttgccagccttctggtcaagcac
ggcaagttcttcgtgaaaatgctacggacgagcgcctggtggcctcaattacgcggcttt
gacggcattgagtgggaagaacccgaggtaccgaccctgccccagtgggcacaaccagac
tcgaagcaatggtactattccgaagaagagaaggaagagcaactacgcttacgggaatcg
cgagatcggaaattctggcaacgagtcggcgagctgggtgaccgggctggcatacaggcc
tttttcgagcttggcgcacgtcgcatcactaccaacaaacgacaaccggaccagacacta
cctgctgagggtgctccgctatccaaacaacaggctgctcggaagtgggctgatgaatgg
atggagcagaccaagaccctgccccctcccggcaacgacatcgcagctcaactgcttggc
ttcaagcttcagttttatgcctcagacagtcgcgatgctggggacaacctccccgagaac
ctcatgtatctgatcgcactcttgatcaagattgaggaggatatgcctgcgcacaaggag
aaactcttcaaagccaagaggcaaaaggaggaacaggaaggaggagcggttctcaatgcg
cttaccatggctggtgcattgcctgacgatacacccggccaaccagctgtttcccgcctc
agggatgccgagagtagaccaaagtcggacagcgggcgaaatacgcctgctaaacccgac
gagtccggcgacaagaccaaggatttacctgaagctagagaccaaaagtacacgctgttg
aagagtctgctatgtattggtgcactccccgaagcattgttcattcttggacgtcatccg
tggtttctcgaagtgtaccctgagctgctggacctcatcttccgactcgcacaccactct
ttgagcaaggtctacgaagccaccaaacccacttcggctgagcgtccttttatagctacc
aagggagccggtgtccgcggaccctcaaaaccaaccgacttcgtcccccgacggcctctt
cgatgggcgaaagcagatacaaaggatatggatggtggaatcgactacaagttctattgg
gaggattgggtagacaatgttcccgtatgccaagaggtggacgacgtaatgaagctctgc
tccactcttctaggcttggtaggggcagagtgtggcaaggatgtcgtgctcctgaccaaa
attgtacgcattggcaaaaagagcttggctgacgatccctcggacgcaaatcgaaagcga
tggatcaacttttcgacaacctttatagcacccgccatcaccttcactggtcggaatcct
gccgtcatcaatgaagtgtgggatctatttaagagtttcgacaccgcaacccgatatacc
atctaccagcagtggttcagcggaatgctcaaaccagcggttaagacggcttttcagaaa
atccaggtcgagaccaggcagacgctgagccgaatttctgcaactaataccaaggattac
ggccgtaaaattgcaaagatctcacacgccagccccgggatagtctttgagagaacggtc
aaacaactcgtcaattatcccaacatgatcaacgtcttggtggagtgcagtcgatacctt
accctgcttggatacgacgtcttgacatggaccttggttacttaccttcggaaccctaac
aaaggctcacaacaagacgacggtatgctttctgcgccatggctcaagaacattgccacc
tttgttggtagagtctacgcagaataccgcctgatggacgcaacaccagtcctgcaactg
atcgcgcatcaacttctgtgctcagaaggcgagctttatatgctggatgtccttgagcag
atggtcaagtccatgggtggtatcagcttcagtgggtctgtgtctgagtccatgaacctg
gcgctcagtggcggacctcaactccgcacctttatcctgtctcatcgtctggccgacgat
cgtcacaaagctggcgtaccagcaagacgtcttatcaagtggctaaaagagacgggcctg
ggtcctcagatactaatcgccctggcacaacacgttgaggcttatgttcaccgtgaagac
caacaggaagtgcccgacaagcctgtgctcttcaacgttgacaagctacgctccaacctg
cttcactttttggaacttcttcgcgcgtacatctctgtggatgaatttgacaccatcttt
ccttcgctgatcgaaatgatggcggagttccacgttgaaccggatgtcgccttcaccatt
gctcgtgcgagcatagcaaccaaagctagcgcatttcgagctgcgcagcgcacgaagctc
attaccgacaatgagacgaacggcgacacatccatgagtggtgttgggaactcgtcactt
acgaatggaaccggcgccacggatgccaagaccacgaaagctgctgaagatgtggagatg
aaagactcggccccatctacagatgctgttataggggaaggagatgcagccgcatctacc
gtcgcgcgagaggaaaagcccgatgtccccaaccttgagatcgagaaactggcgacccaa
ctcaaacagcacatgcctgacaccttcggccagcatccgtgcctgtctttctacatcact
ttctggcaattatatctacgcgatgtcgacattgacggaatcaaccaacaatacaaggag
accatcgcataccttgagcggcgaattccagctcctccgcccgagcgacgtggaggttac
agacctaacgtgcctaaacctgatacagctgaagttcgcaacgccaaagccgatattgct
caacttcgtgaagaacagcaagtcttcatcacagcgaaagctgccacgcaagacagctta
cgagctgaacttggacgatggtttgacggcgttcctatgatcggaccacagtgcgacgcc
ttgcacaatgccttgcttcaagactgctttattcctcgcagccgcatgtcactggaagat
gcgcaatatgcgtcttccatgctcatgtttatgcacagctcaggagtacctggattccgc
atgagcagactactagacgttctcttcaattccaacaagcttatggctatgataagtatg
ttcacagaaggggaggcttcgtcctttggcagattcctgagcgatatactgcgcgaactg
caaatctggcacgccaacaagaatgacgcttacgtgaagaacgcacatggtccagaacag
aacctgcccggctttggaagaagctacaacacagagcggaacgcgaccacgttcttccct
tacgagcagttctgtatggtcttgttcaagtggcacaaagccctaacaaccgcgctcaag
gcatgcttggagagtggcagttatatgcagatgcgcaacgctatcaatgttttgcatgct
ctgggcggtaccttccccaaggtcgtaactctaggcacggagctcaaacagacaattcag
gctttggaggagaccgaggagagagaggatctcaagaaggcactgcaatctatactagga
ccagtcacgaaaggggagaagtcatggctagaagagcatgtattccgcaacacaacggcg
ccaccacctgcgcccggaagcacgaccaatgcaagcgataaagctgctccagagaagggc
aagacgccgcagccgcacgattcaaaacccaatgcgactgcactgacctctaatccgaaa
tctgaacctaatgggacccagcgtactccggcacgagacgataacgggtcgaagcgcggt
gttcctaatcctgcaacccctgttcctctaagagatagagaacccgtccagtcttcaaga
ctttctgaagctaggccatcgactccctcacagcaggagaatggtgtcggtagatccacg
tccaaaccaggcccaccgatgcatccgtcttctgtgccaccacgcccggatagtagaaac
acaccaacccagcccacttcagtcggcaggccatcgcacgctctaccgtcgcgaccggac
acgcaaccgtcaagaacgcgacagcccgagcgacctcttactgagcgacctcttactgag
cgacctctcgaaggtggacacagtcgctatgataatagaggtcacccggccgagtatggg
cgactagatcgttccggagatcctgcacgccagcgtgaagcatcgcccggccgacgtgcg
cgactgcctggtggcagaactcctgaaaggatgcctgcaggtgccgatcaccgcgaatgg
tctggaagagaaagggattatgaagatcgcgctctacgaccaatgccgcgggacacgcga
gcaccgccagtacgaccaccacctacttgggacccacgtgacgctagagacccgcgtgac
tccagggacccacgagatctcagggaccaacgcgaacgttctgagcctcgaggccatgct
ccgcttccgataatggacgcccggcgcatgccgtccaactcatcgctggccaatgaatat
cggcgagatggaccgccaccgaacgcttcttatggctcagaacaaagcgacagacattcg
cgagcacctccagcgccaattccagccaaggaagaacctacagtcaaccctgcacgcgct
gcgttgatcaatcaagtcgagcatgggagacatgaaccgccaaggtctgaccgtgacaac
cgtcgtgagagagaacctcgtctgaactcgcctcgtcatggcgaggataggcgtggtgag
gatcgtcgagttgatgagcgcccacctagttatcatgggcgaagtgatgtgccacgtgaa
gttcgagacgagcgccccatccctccatctggaaaccgagaccgtcgggaggaaccagca
gcaagcgcacctacaggaccccgcagtggacgcaatgaatcttcatcttctcgcgcatcc
cgggagatgttccaacccgcatccggtccacggtcatccggtcaccaggttcaggatccc
aactacgggcgattgaatcagccttctgagccggcaccaccatccggcccacgtagcgat
aggccgcattcacaacctcagcctcctacacccactgcacctaccgggcccgcagcctca
ttacccgcaggtatccatcctagcaggctggtgaacattgagggcagaccacccagcgga
ccaccactccagacgaatatacccaatgctccaagcggcccgcggggctctaacagggca
cctcaaggtcctattccatcttctcctggtggtcgggggccacccacaggacctgccgct
gccgaccgtggatcaaggaacgctgggaaccctctacgagctatcaataatgtcttgact
gggaatgcgcccgccgaccgatcaagtgagcgcattgcacctcctcccaaccctccggtg
cgcggtcggggtgcaagccgagctaacggtcctgtggaaggctcaggcggtatgccaagc
cccatgccaccgccagcgcacgcatcaacacccaaccgtgttgaaaaccaacatcctagg
agcagtcgaaacgacgatatcccaagcaggccagatggcatccccttggaggaaggtcgc
tccgagtcgcgcagccatagggacagcagacgcagcgagcggtcaggacgtgagcgatcg
tcacctgaacgatctgagcgccgcccagacgagcgaagcagccgcactgccccttctgat
cggcctgagggtgaacgcggaggaagagaaaagcgcggtggcgatagggaaaccagccgg
cgagaccgtgaacgagaaggcgaatcgcgctcggcgcgtgaaccacgggagagcagtaga
cgcgaacgcggtacgcgagaggatggtggacggacctctggccgagaagaccgtgacagg
aggagtcgaggcggcggtggaagcagcggtgtagacgatggtcgcaaacgtggccgcgat
ccacaagaccaggcccatggcgatgttaagaggaggcgctga
DBGET
integrated database retrieval system
