Pyrenophora tritici-repentis: 6339514
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Entry
6339514 CDS
T10215
Symbol
PtrM4_006460
Name
(RefSeq) RING Zn-finger protein
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
ptrr Pyrenophora tritici-repentis
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ptrr03009
]
6339514 (PtrM4_006460)
04121 Ubiquitin system [BR:
ptrr04121
]
6339514 (PtrM4_006460)
Enzymes [BR:
ptrr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
6339514 (PtrM4_006460)
Ribosome biogenesis [BR:
ptrr03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
6339514 (PtrM4_006460)
Ubiquitin system [BR:
ptrr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
6339514 (PtrM4_006460)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
TPR_26
zf-RING_2
FANCL_C
zf-ANAPC11
zf-rbx1
Ketoacyl-synt_C
TOR1L1_N
zf-RING-like
zf-RING_16
PWI
RINGv
zf-C3HC4
iSirtuin
Motif
Other DBs
NCBI-GeneID:
6339514
NCBI-ProteinID:
XP_065965002
LinkDB
All DBs
Position
1:<1635632..>1640545
Genome browser
AA seq
1619 aa
AA seq
DB search
MSKRSAKAQASSARATTTPTFGAFGGATQAFGASSSTLSYVSEPPDLTAISDPNVVVYFR
NLSKKDSTTKAKALEDIQAYVSALQEPVEDGLVEAWIKIYPRTSIDNAKAVRQNAHLVHG
HIALSAGKRMAKYMPKSVAAWLCGLYDSDRSVVEATQTSLRQVFNSPEKLQSIRKAYQQP
IMEYCRDAIDKESTTTLSDERIVSKDDAEAKYSRVISACISLLGSLLANLQSEELSKYET
DYKSVFCDKKLWNFASYSDARIRRSTHRLLKTCLAKEHVSIKDNIDIISKAYLAEALKSD
QTGSVSDYIDSLTLLTTKYPSVWTTDYTSKTAVERRLRQFLQKGSQFGPRDFWDRLTELF
KVIPKEVLPTQETEAAELLRALHIGIVRKDEPKYNAEAAFSAYLDIAGLLLQPLEGTERT
KLLQEMVLLILTQYLQPSLENSQWSMPANATNLFSKALRIEGMKVVLEEQWPLMSKQLID
NIKTSAPEQSKDYEKSQTGVVQQATRFAIVQDHALQIDNLATLRPVLIDSCASIVAEALE
VLKNRNGKPYGAAGTVAAILKRSPSLISSTQAEQDLELFIQQDLHTLVLSPSSSYLIDVL
YSKSDCAFFKDAWSASLKAVLKETDSPGKTKALESILTSSRIPSAFDLATSDPELQKYII
ANVREAVEGEAEWDSFSRMLSSPAKVLAPETTDDILAYMTKSLSISQQAPYSLQGLRQIV
KSKPSMLREFLARPQGSALLQGLLVASESPSDEVSQAATAVNASIRTLLSSSSDSTQSMY
DLIQQGIRDATSTSVSVETLVDLAKQSVKTGGDWTEISKVFPSLEDWNAALKPFLNAPPR
SSLAITNPLGGAVYLVKSTQPLLQAETTPRDSDGNSSAYRMTQYVTRLFKNPELFPIDNV
PRELRDAYLRNIAVAVQLADDNLGLAGSNGFWSHYDSYAEADAMTFMSDAQSFVAQELKS
LVATWGSNNPDASLMTWADKLLSDIDVDATSVTYYNARTYSVLLTDAIEIAAWKNAHTSQ
LQEILKATRKNKNFFQILALINAFREPLSEAKACERMCNEIVADLTGLDIEKDWPVALHQ
IVLLNSLLNQDGILESIAKLRLVNFVQHVAPWLQQEDLALPVKAELCRALSVLLPLMNDT
YSGDWSTILNALAGIWSSTKELEANESETGSSIPLIHASLKLYAKLRTLTEEEETNDDLL
EAWKEMEQPVADGLINLLKHSQHFPDEFHQPLKMVNDVLARQISKVSLKHLDSTEELFPL
LYVESQPVQQTAFDILHKQIPAAQEQISIDAALEKNTARLPEELLSLIIEAPKVATLAEA
NLDRSVPLPLRGYLLSWLLVFDHLEHASFKVKNDYVEHIKEGEYLPGLLDFAFDFLGHMH
NKPVDVSKLDITTYEPDAEPPKRDLQWLLTHLYFLCLCHVPSLTKTWFKNCKSRALVVAL
EPWTERYVSPPVIVAALEAVNTWSEEQSAAEPDSPFTVKVASRAREITASYTVDDQTMSM
RISLPAAFPLANAHIEGINRVAVSETKWQSWLRTSLGAITIFNGSLIDALTTFKRNVDGA
IKGQTECAICYSIVGSDRKLPDKKCGTCKNLFHGVCLFKWFKSSNSPSCPLCRTNFHYA
NT seq
4860 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgttccgccaaagcacaggcaagcagtgcgcgggcgaccacaacacccaca
tttggcgcattcggcggcgcgacacaggcctttggcgcaagctcgtcgaccctttcctac
gtgtcggaacccccggacctcactgccatatccgatcccaacgtcgtcgtctatttccgc
aacctctccaagaaggacagcaccaccaaggcaaaggcactcgaagacatacaggcatat
gtgtcggcactgcaagagccagtggaagacgggctggttgaggcatggatcaagatctac
ccccgcacatccattgacaatgcgaaagcggtgcgtcaaaatgcccatcttgttcacggc
cacattgccctgtccgccggcaagcgcatggcgaagtacatgcccaagagcgttgcagct
tggttatgtggtctctacgacagcgatcggtccgtggtggaagcgacacagacttcactg
cgccaagtcttcaactcgcccgagaagctacagagtatccgcaaggcctaccaacaaccc
attatggagtactgtagagatgctatagataaggagagcaccacaaccctgagtgacgag
cggatagttagcaaagacgacgcagaggcaaagtacagccgcgtcatttcggcatgcata
tccctattgggtagtttgttagccaacctacagtctgaggagctatccaaatacgagaca
gactacaaaagtgtcttctgtgataagaagctctggaactttgcctcgtatagcgacgct
agaatccgtcgctcaacccaccgtctcctaaagacttgcttggccaaggaacatgtttcc
ataaaagataatatcgacatcatcagcaaggcctatttggctgaggcactgaaatctgac
cagacaggttctgttagcgattacattgactccttaacgcttctgaccaccaagtacccc
tccgtatggactacagattacaccagtaagacggctgtggaaaggcgcctaagacaattc
ctccagaagggctctcagttcggcccaagagacttctgggatcgtctgaccgagttgttc
aaggttatcccgaaagaagtcttgccgacacaggagacagaagctgccgaactgttgcgc
gccctgcacattggtattgttcgcaaggacgagccgaagtacaatgctgaagcagcgttt
agtgcctatttggacatagcgggacttcttcttcagcctctggaaggcacggaaagaacg
aagctcttacaggagatggtattgctcatcttgacacaatacttgcaaccatctctagaa
aattcgcaatggtcaatgccagccaacgctacgaatctgttttcgaaagcgttgcgaatc
gaaggaatgaaagtcgtgcttgaagagcagtggcctttgatgtccaaacaactaattgac
aatatcaaaacctcggctcctgagcagtcaaaagactatgaaaagtctcaaactggtgtg
gttcaacaggccacgcgcttcgccattgtgcaagatcacgctctgcagatcgataatctt
gcaaccctgcgccccgttctcattgattcgtgtgcctcgatagtagcagaagctctcgag
gtgcttaaaaatcggaacggcaagccttacggcgcagcgggcactgttgcggctattttg
aagcgtagtcccagcttgatatcatccactcaggcggagcaagacttggagctttttata
caacaggatctccacacactggtactatcgccgtcgtcttcttacttgattgacgtgctt
tactccaagtcagattgtgcctttttcaaggatgcgtggagcgcatctttgaaggctgta
ctgaaagagacggactccccagggaaaacgaaggcgttggaatccatcttgacatcctct
agaataccatcggcttttgatctcgctacatcggaccccgaattgcaaaagtacatcatc
gcgaatgtccgagaagctgtcgaaggtgaggcagaatgggattcctttagtcgtatgctt
tcatctccagcaaaagtactggctccggagacaacagacgacattctcgcctacatgaca
aaaagtctgtcgatatcacagcaagctccatattcactgcagggcctacgtcagattgtc
aaatcaaagccgtctatgctgcgtgagtttctcgcgagaccacagggatctgcccttctg
caaggcttgcttgttgcctctgagtcaccgagtgatgaggtgtcacaggctgctacggct
gtgaacgcatcaattcgtaccttgttatcgtcaagttcggattccacccagtctatgtat
gatctcatccaacaaggcatacgagatgctacttcaacatctgtctctgtcgaaactctg
gtagatttggccaagcaatcagtcaagacaggcggtgactggaccgagatctcaaaagtc
ttccctagtctagaagattggaacgcagccctcaaacccttcctgaatgctccgcctagg
tcgtcattggcgattaccaatccacttggaggcgctgtataccttgtcaaatcgacccaa
cctttattgcaggctgaaaccacgccacgggattccgatgggaattcttctgcgtacagg
atgacccagtatgttacaagactcttcaagaacccggagctctttcctatcgacaacgta
cctcgtgaacttcgggatgcatatcttcgcaacatcgcggtcgctgtacagcttgcggac
gacaacctaggtcttgccggctctaacggcttctggtctcactacgactcttatgctgaa
gctgatgcaatgaccttcatgtcggatgcacaatcattcgtggcccaggagctgaagagc
ttagttgcaacttggggcagtaacaatcctgacgcttctctgatgacctgggcggacaag
ctgctttctgatattgacgttgatgccacgtctgtgacatactataacgcacggacttac
agcgttctgctcacagatgccatcgaaattgccgcatggaagaacgcccacactagtcaa
ctgcaagaaatactcaaagccacgcgcaagaacaagaacttctttcagattctcgcattg
atcaatgcctttagagaaccgttgtcagaggccaaggcctgtgaaagaatgtgcaacgag
atcgtcgccgacttgaccggtctggacatagaaaaggactggccagtagccctccatcag
atcgtcctattgaacagtctcctaaaccaggacggcatcttggagagtattgctaagttg
cgcctggtaaactttgtccagcacgttgctccttggcttcaacaagaagaccttgctctt
ccagtgaaggcagagttgtgccgcgctttaagtgtgttgcttcccctaatgaacgacaca
tacagtggagactggagtaccatactgaatgcgctcgcggggatctggtcatcaacaaaa
gagctggaagcaaatgaatctgaaacgggcagttccataccgttgatacacgcatcccta
aagttatatgccaagctgcgaacccttaccgaggaggaagaaacgaatgacgatctacta
gaggcctggaaggagatggagcaacctgtggccgatggattaatcaatcttctgaagcac
tcacaacacttccccgacgaattccaccagccgctcaaaatggtgaatgatgtactagcg
cgtcagatctctaaggtttcactgaagcatctggattccactgaagagctcttcccatta
ctctatgtcgagtcacagcctgtgcagcagactgcctttgatattcttcacaagcagatc
cccgcagcccaggagcagatctccattgacgcggcattggagaagaacactgcacgcctg
ccagaggagctgctatctctcatcatagaggcccctaaggttgcaacattggcggaagcg
aacttggatcggagtgtacctttgccattacgaggctacctactgagctggctactagtc
tttgaccacttggagcatgcatctttcaaggtcaagaacgactatgtcgagcacatcaaa
gagggggaataccttccaggcctcctcgactttgcttttgactttcttggtcacatgcac
aacaagccggtcgacgtgtccaaacttgacattactacgtacgaacccgacgccgaacct
cctaagcgcgacctgcagtggttgctgacacacttgtactttttgtgtctgtgtcatgtc
ccgtcccttaccaagacgtggttcaagaactgcaaatcgcgcgccttggttgttgctctc
gagccatggaccgaaagatacgtctcaccacctgtaattgttgccgcgctcgaggcagtg
aacacatggtcagaggagcaatcggcagccgaacccgactcccctttcaccgtcaaagtc
gccagtcgcgcccgcgagataaccgcctcatacacggtggacgaccaaacaatgtcgatg
cgcatctctcttcccgccgccttccctctcgcaaacgcacacattgaaggcatcaaccgt
gtcgctgtcagcgaaaccaagtggcaatcttggctccgtacatcccttggcgccatcacc
atcttcaacggctccctcatagacgcattgacaacgtttaagaggaacgtagacggagca
ataaagggacagaccgaatgtgcgatttgctacagtattgtcggctcagacaggaagttg
ccagacaagaagtgtggaacttgcaagaacttgttccacggtgtttgtctgttcaagtgg
tttaagagcagtaacagtccgagctgtcctctttgcagaacgaatttccattatgcttag
DBGET
integrated database retrieval system
