Pyrenophora tritici-repentis: 6339515
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Entry
6339515 CDS
T10215
Symbol
PtrM4_008230
Name
(RefSeq) SrmB, Superfamily II DNA and RNA helicase
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
6339515 (PtrM4_008230)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptrr03041
]
6339515 (PtrM4_008230)
Enzymes [BR:
ptrr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
6339515 (PtrM4_008230)
Spliceosome [BR:
ptrr03041
]
Complex A
U2 snRNP components
U2 related factors
6339515 (PtrM4_008230)
Complex B
6339515 (PtrM4_008230)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
6339515
NCBI-ProteinID:
XP_065965077
UniProt:
A0A317AE70
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All DBs
Position
1:2052928..2055682
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AA seq
899 aa
AA seq
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MASRHADYERRRYSPRRDRSRDRRDRGDRYGGPGGGRYSDDRRGDRRDDRRDVRRDERRD
ERRDERRDERRDERREYRPRSRSPARRDRSRDRTYRRDDDRDRRSNSYRPGSRSSGRPGS
RSSATPAPDSRRDRLDSTSRDERKKDPETLAKEKLADRAAKLAEWKKRNAERLAKDKTDT
PGSGASPTGKAPATPTVVATPLPVPAAEAKFEIPKSKVPQKSATEKVKQKQPEKSTFRLD
ASAAARPLDLAKPAGKAVTSAASSMPPSPSPIMKQNLTEELDSGALKANGNIGSFGLKTK
TAAEVEAETSRKALLDEEGPTRKRKFQALPEFNNHDEPESEANGTEDDTAMSAIGSEDEE
NNAELQARLEKRRAEIAIENQQDTVMEEAPDVVAAPAADQMEVDQHTGAEEDDIDPLDAF
MADLNEPQPSRNAPSGEAMFADELEPIEMSVADEDINQLRAVKKKKREVITVDHEKVEYE
PFRKNFYTEPAEISQMKPEEVADLRFELDGIKVNPDNVPRPVTKWAQMGLLQATMDVFTQ
VRYEKPTAIQSQAIPIAESGRDLIGVAKTGSGKTLAFGIPMIRHILDQRPLKPSDGPIGL
ILAPTRELSLQIVHELKPFLAASGITIKCAYGGQPISEQIAMLKRGGIHILCATAGRLID
LISCNSGRVLSFKRITYVVLDEADRMFDMGFEPQVMKILANVRPDRQTILFSATMPKNMH
ALAKKALKDPVEIIIGGKSKVAAEITQIISVVPPSYDKKINNTLLHLGRLFDEDENAQVL
IFTERQETAEDLLSKLYKAKYFSVNTIHGAKDQTDRNEAISDFKQGVLSILIATSVAARG
LDVPGLAMVFNFDCPTHCKFFLPSLHLSDHTNTLPSGRLCPPMWSYWPCRQQRNCYYSH
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcacgccatgctgattacgagcgcagacggtatagtccgcgccgtgatcgctcg
agagaccggcgagatcggggagatcgctacggtggccctggaggagggaggtacagtgac
gaccgacgtggtgaccgccgcgatgaccgccgcgatgtgcgtcgtgatgagcgtcgtgat
gagcgtcgtgatgagcgtcgtgatgagcgtcgtgatgagcgtcgtgagtaccgacctcgt
tcacgttcacctgcacgccgtgatcgttccagagatcgtacgtacaggcgcgacgacgac
cgtgataggcgctccaattcgtacaggcctggttcgcgctcgtctggcaggcccggttct
cgctcatctgccacgccggcgcccgacagcagacgcgaccgcctagacagtacctcacgc
gatgagaggaagaaagacccagagacattagccaaggagaagctggcagaccgcgctgca
aagctcgctgagtggaagaagcgcaatgctgagcgtcttgccaaagacaagacagatacg
cctggttctggtgcatcgccaactggcaaggcgcctgcaacacctacagttgttgcgacg
ccactgccagtcccagcagcagaggctaaatttgaaattccaaagagtaaagttccacag
aagagtgcgactgagaaagttaaacagaagcagccggagaaatccaccttcaggctcgat
gcgtccgctgcagcaaggccgctagaccttgcgaagcccgccggcaaggcagtcactagt
gctgcgagtagtatgccaccctcgccctctccgatcatgaaacagaacctgacagaagaa
ctagattccggtgccttaaaggccaacggtaacatcggttcttttggtctgaaaaccaag
actgccgccgaggtcgaggctgagacttcgaggaaggcacttctcgatgaggaaggcccc
actcgcaagcgcaagttccaagctctacctgagttcaacaatcacgacgaacccgagtcc
gaagctaacggcaccgaggacgatactgctatgagcgctatcggtagtgaagatgaagag
aacaacgctgagctacaggcacgccttgagaagcgtcgcgccgagattgctattgagaat
cagcaagatactgtcatggaagaagcccccgacgttgtcgcagcccctgccgccgaccaa
atggaggttgaccaacacacaggcgccgaagaagatgacattgaccctctcgatgccttc
atggctgatctcaacgaaccacagccaagccgcaacgcgccttccggtgaagccatgttc
gccgatgaacttgagcctatcgaaatgtccgttgcagacgaggacatcaaccaactccgt
gcggtcaagaagaagaagagggaagtcataactgtcgatcatgagaaagttgagtatgaa
ccgttccgaaagaacttctacacggagccagccgaaatatctcagatgaagcctgaggaa
gtcgctgatctccgtttcgaattggacggcatcaaggtaaatcctgataatgttccccgg
cctgtaaccaagtgggctcagatgggcctgcttcaagctaccatggatgtattcacacag
gtacgctatgagaagccaactgcaattcagtctcaggccatacccatcgcggagagcggc
cgcgatctcataggagtagccaaaaccggctccggaaagacacttgcgttcggtatacct
atgattcgtcacatacttgatcagcgtcctctgaagccctctgatggccccattggacta
atcctcgccccgacacgtgaattgtccttgcagattgttcatgagctcaaacctttcctt
gctgcttccggtatcacgatcaagtgcgcatacggcggtcagcctatctccgaacagatt
gctatgctaaagcgtggtggtatacatatcctgtgtgccacagcaggacgcctcattgac
ctaatctcttgtaattctggtagagtgctcagcttcaagcgcatcacttacgttgttctc
gacgaagctgatcgcatgtttgacatgggctttgagccgcaagtaatgaagatccttgcc
aatgtgcggcccgatcgtcagaccattctgttttcggccacgatgccgaagaacatgcat
gctttggcgaaaaaggctttgaaggacccagtagagatcatcatcggcggtaagagtaag
gttgctgcggagatcacccagatcatctctgtcgtaccccctagctatgataagaagatc
aacaacacactgcttcatctcggccgactgttcgatgaagacgaaaacgcccaggtatta
atctttactgagcgacaagagacggccgaggatctcttgtcaaagctgtacaaggctaag
tatttctctgtcaacacgatccatggagctaaagaccagaccgatcgtaacgaagcgatc
agtgacttcaagcaaggtgtgctttccattttgatcgctacttcagttgcagcccgtggt
ctagacgtcccaggtctggccatggtcttcaactttgattgtccgactcattgtaagttc
tttcttccatcgctacatttgtctgatcacactaacacactgcctagtggaagactatgt
ccaccgatgtggtcgtactggccgtgcaggcaacaaaggaactgctattactctcattga
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