Pyrenophora tritici-repentis: 6339635
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Entry
6339635 CDS
T10215
Symbol
PtrM4_018980
Name
(RefSeq) SrmB, Superfamily II DNA and RNA helicase
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
ptrr Pyrenophora tritici-repentis
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ptrr03009
]
6339635 (PtrM4_018980)
Enzymes [BR:
ptrr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
6339635 (PtrM4_018980)
Ribosome biogenesis [BR:
ptrr03009
]
Eukaryotic type
Pre-60S particles
Helicases
6339635 (PtrM4_018980)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
CTT_SPB4
ResIII
DUF8048
Cas3-like_C_2
KRAP_IP3R_bind
Motif
Other DBs
NCBI-GeneID:
6339635
NCBI-ProteinID:
XP_001931799
UniProt:
B2VWA4
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All DBs
Position
1:complement(<4809587..>4811613)
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AA seq
641 aa
AA seq
DB search
MAPQNKTDRSFGALTPALSEWILEAVDSMGFVKTTPVQHAAIPMFMKNSDVVVEAVTGSG
KTLAYLIPIVERLLRLDAPIKKHHVGAIIISPTRELATQIHTVLSSLLRFHAPSAALLDP
EDEDTDMEDAGAPPKPTFPPGTLKVVPQLLLGGSVTPAQDLSRFLKSSTNVLIGTPGRLL
ELLSSPHVHCSQSSFDALVLDEADRLLDLGFSADLQKILSRIPKQRRTGLFSASVSEAVD
QLIRVGLRNPVRIAVKVKARAASNGTTGEAGVIEDRKTPASLQMSYLVMPASHKLPAIKK
VLSSMQPQPQKSIMYMATCFSVDYFQHVLPELLKGFTIVPLHGKHPDKVRKRNFIKFVDS
VTPTILLTTDVAARGLDIPSVDLVLQLDAPSDPKTFIHRCGRAGRAGRRGLALTFLSPGR
EEDYIEFLRVRQTPISPLTTPNVEVTAEEAEAMSNRIRKVVKSDRALFDKAQRGFVSWVR
AYSKHTASSIFRIPDLDWTELGNAWGLLKLPSMPELKKWDGDRSLGVTMDFSTYAYKDKA
REQQRQAEQQEYEATKAEGKKRYVTEDKKASAWTQQKDQKALKELRREKKAARREHDRVA
ALTEDERKEEERLKGMIEQMRKKVAEKEAQDAADEFEGFSD
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggcgccacaaaacaagactgaccgctcctttggcgccttgacgcctgctctttcagaa
tggatcctcgaggctgtggattccatgggttttgtgaagaccacacctgtgcaacatgcg
gccatccctatgtttatgaaaaactccgatgttgtagttgaagccgtgacgggaagtggg
aaaactctagcttatttgatacccattgttgagcgtctgcttcgattagacgcgcccatt
aagaagcatcacgtgggagccatcatcatatcgccaaccagggagctagcaacgcagatc
catactgtattatcgtcactccttcgattccatgccccctcggctgctttattggatcct
gaggatgaagacaccgacatggaggatgccggcgcccctccgaaaccaactttcccccca
ggcacgctcaaagtcgtgccccaattactcctcggtggatcggtaactccagcccaagat
ctcagtaggttcctgaagtcatccactaatgtactgattggcacacctggtcggcttctt
gagctcctctcttcaccgcatgtccattgctcacagtcatccttcgatgctctcgtcctt
gatgaagccgatcgacttctggatttgggattcagtgcggatctccagaagattctatcc
cggatacccaagcaacgccgaaccggtctctttagtgccagtgtgagtgaagcagtcgac
cagcttatccgtgtgggtctccggaaccctgttcgaatcgcggtcaaggtcaaagcacga
gctgcttccaacggcaccacaggagaagctggagttatcgaagaccgaaaaactccggcg
agtttgcaaatgtcttatcttgtcatgcctgcttcgcataagcttccggccatcaagaaa
gtattgtcttcaatgcaaccgcaaccacagaaatccatcatgtatatggcgacatgcttc
tctgtcgattacttccagcacgtgcttcctgagttgctgaagggttttaccattgtaccc
ttgcacggcaagcatcctgacaaagtgagaaaaaggaactttataaaatttgttgactct
gtcactcctaccatacttctaacgaccgatgtggcagcacgaggactggacatcccctca
gttgatctcgttctgcaacttgacgccccaagtgatccgaaaacattcatccatcgctgt
ggtcgtgcaggtcgtgcaggccgcagaggacttgctcttacattccttagccctggtcga
gaggaagattatattgaattcttacgagttcgacagacgccgatatctcccttgacaacc
ccaaacgttgaggtaactgcggaagaagcagaagcaatgagtaatcgcataaggaaggtg
gtcaagtcagacagagcacttttcgataaagcacaacgaggctttgtatcctgggtccgc
gcatatagcaagcacactgctagttcaatcttccgcatcccagatctcgactggacagag
ctaggtaacgcatggggccttctcaagcttccaagcatgccagagctgaagaaatgggat
ggagaccggagtctgggtgtcaccatggacttcagcacttacgcatacaaggacaaagca
cgtgagcaacaacgacaagctgagcagcaagaatacgaagcaaccaaggcggaaggcaag
aagcgatatgtaactgaagacaagaaggcatcggcgtggacccagcaaaaggaccagaaa
gccctgaaagagctaagaagagagaagaaggcagcaaggcgcgagcatgaccgggtagca
gctttgacagaagacgagcgaaaggaagaagagagactgaaaggcatgattgaacagatg
cgaaagaaggttgcagaaaaagaagcacaagatgcggcagatgagtttgaagggtttagt
gattga
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