Pyrenophora tritici-repentis: 6339889
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Entry
6339889 CDS
T10215
Symbol
PtrM4_018820
Name
(RefSeq) RNA-binding protein (RRM domain)
KO
K13126
polyadenylate-binding protein
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03015
mRNA surveillance pathway
ptrr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
6339889 (PtrM4_018820)
09123 Folding, sorting and degradation
03018 RNA degradation
6339889 (PtrM4_018820)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6339889 (PtrM4_018820)
03041 Spliceosome [BR:
ptrr03041
]
6339889 (PtrM4_018820)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
6339889 (PtrM4_018820)
mRNA cycle factors
Stress granule specific factors
6339889 (PtrM4_018820)
Spliceosome [BR:
ptrr03041
]
Complex C
Other components
Complex C specific factors
6339889 (PtrM4_018820)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RBD_DEAH11
DUF2800
PABC_AtC3H46
RRM_YTH1
Motif
Other DBs
NCBI-GeneID:
6339889
NCBI-ProteinID:
XP_001931782
UniProt:
B2VW87
LinkDB
All DBs
Position
1:complement(<4767716..>4770008)
Genome browser
AA seq
747 aa
AA seq
DB search
MSEVANATSPVQDGADANGAQINTNVPAAQGEVSTPTSAAPAHNQNSASLYVGELDPSVT
EAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCR
IMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGF
VHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDV
SDEDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLY
VGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITS
AKVMRDAMPAAGSEDATDEKKDESKEESEEAKDESKEDSDDKKDEKADKVTIKGEKKILG
KSKGFGFVCFSNPDEATKAVTEMNQKMIENKPLYVALAQRKDVRKNQLEATIQARNQLRM
QQQQQQQFGGIPQMFIAPGQQPMMFPAGGRGQMPFPAGIPGQQGGRGAGFPGGMPGQQGG
RGGPNGQQMPPMYMPPGMAPGAFPPAYMNQQYMQLAQAAQQAMGGRGGRGGVPMAPMPGM
PQVPMAGVPGMRGGQGFPPQGAGRGGMPQGRPGQSPMPNYPPGGRGGPGGAGVDMSALQG
AAPGQQKQMLGEALYPKIAEMQPELAGKITGMLLEMDNSELINLTADEAALRAKVDEAMS
VYDEYVKNKEGEPEKDAPKEESKEEKA
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagttgccaacgctacctcgcccgtccaggacggtgctgacgccaacggcgct
cagatcaacaccaacgtccccgctgcccagggcgaggtctccactcccacctccgctgcc
cccgcccacaaccagaactctgcgtcgctgtatgttggcgagctcgatccctccgttacc
gaggccatgctctttgagctgttctcctccattggccaagtcgcgtctatccgtgtctgc
cgtgacgccgttacccgtcgctcgctcggttacgcctatgttaactacaacagctctgag
gacggcgagaaggccctcgaagagctcaactacaccgttatcaagggcaagccttgccgt
atcatgtggtctcagcgcgaccccgctctgcgcaagactggtcagggcaacgtcttcatc
aagaacttggaccatgccattgacaacaaggctctccatgacacattcgccgcttttggt
aacatcttgagctgcaaggttgctcaggacgagcttggtaactccaagggttacgggttc
gtgcactacgagactgctgaggccgccaacaatgctatcaagcatgtgaacggcatgttg
cttaacgagaagaaggtattcgtgggccaccacatccccaagaaggagcgcatgagcaag
ttcgaggagatgaaggccaacttcaccaacatctacgtcaagaacatcgatctcgatgtc
tctgacgaggacttccgtgacctcttcgagaagcacggtgacatcacctctgcctccatt
gcccgcgacgaccagggcaagagccgtggatttggtttcgtcaactacatcaagcacgag
gctgcctctgctgctgttgatgctctcaacgacaccgacttccgcggtcagaagctctac
gtcggtcgtgcacagaagaagcatgagcgtgaggaggagctccgtaagcagtacgaggct
gcgcgtctcgagaagcagtccaagtaccagggcgtcaacctgtacatcaagaacctcaac
gacgatgtcgacgacgagaagctgcgtgacatgttcactcctttcggtaccattacctcc
gccaaggtcatgcgtgatgccatgcctgctgcgggctccgaggatgcgactgatgagaag
aaggacgagtccaaggaggagtctgaggaggccaaggacgagtccaaggaggattccgat
gacaagaaggatgagaaggccgacaaggtcaccatcaagggcgagaagaagatcctcggt
aagagcaagggcttcggtttcgtctgcttcagcaaccccgacgaggctaccaaggctgtc
accgagatgaaccagaagatgatcgagaacaagcctctctacgtcgcccttgcccagcgc
aaggatgtccgcaagaaccagctcgaggctaccatccaggctcgcaaccagctccgcatg
cagcaacaacagcagcaacaattcggtggcatccctcagatgttcattgcacctggtcag
cagcccatgatgttccctgccggtggccgaggtcagatgccgttccccgctggcatacct
ggtcagcaaggcggccgtggcgctggcttccctggcggcatgcccggtcagcagggcggt
cgcggcggacccaacggtcagcagatgccccccatgtacatgcctcctggcatggcaccc
ggtgccttccctcctgcgtacatgaaccagcagtacatgcagcttgcacaggcagcacag
caggctatgggcggacgtggtggtcgcggtggcgtccccatggctcctatgcccggtatg
cctcaagtgcccatggctggtgttcctggtatgcgcggcggtcagggcttccctcctcag
ggcgctggacgtggcggtatgcctcaaggccgtcctggacagtctcctatgcctaactac
cctccgggtggccgcggcggtcctggaggcgccggtgttgacatgagcgctttgcaaggt
gctgcccccggccagcagaagcagatgctcggtgaggctctttaccccaagatcgccgag
atgcagcccgagcttgctggaaagatcactggtatgcttctcgagatggacaacagcgag
ttgatcaacctcactgccgacgaggctgctctccgcgccaaggttgacgaggctatgagc
gtctatgacgaatacgtcaagaacaaagagggtgagcctgagaaggacgctcccaaggaa
gagtccaaagaagaaaaagcttaa
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