Pyrenophora tritici-repentis: 6340024
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Entry
6340024 CDS
T10215
Symbol
PtrM4_007130
Name
(RefSeq) LSM1, Small nuclear ribonucleoprotein (snRNP) protein
KO
K11098
small nuclear ribonucleoprotein F
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
6340024 (PtrM4_007130)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6340024 (PtrM4_007130)
03041 Spliceosome [BR:
ptrr03041
]
6340024 (PtrM4_007130)
03032 DNA replication proteins [BR:
ptrr03032
]
6340024 (PtrM4_007130)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
6340024 (PtrM4_007130)
Spliceosome [BR:
ptrr03041
]
Complex A
U1 snRNP components
Sm proteins
6340024 (PtrM4_007130)
U2 snRNP components
6340024 (PtrM4_007130)
Complex B
U1 snRNP components
6340024 (PtrM4_007130)
U4/U6.U5 tri-snRNP components
6340024 (PtrM4_007130)
Complex C
U2 snRNP components
6340024 (PtrM4_007130)
DNA replication proteins [BR:
ptrr03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
6340024 (PtrM4_007130)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
6340024
NCBI-ProteinID:
XP_001930742
UniProt:
B2VQW0
LinkDB
All DBs
Position
1:complement(1808572..1808970)
Genome browser
AA seq
93 aa
AA seq
DB search
MAAVAPFNPRPLLQSLVDKDIVVRLKWGETEYKGRLISVDLYMNIQLSNTEEFVNGVSSG
TLGQVLIRCNNVLWIGKAEEVEPKATKDTAMSG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgttgcacccttcaatccccgaccactcctccagagcttggtcgacaaagac
atcgttgtccgattaaagtggggcgaaaccgagtacaagggcagactcatctccgtcgac
ctctacatgaacatccagctgtccaacacggaggaattcgtcaacggagttagctcagga
acgctcggacaagtgctcatccgctgcaacaatgtgctctggatcggcaaggccgaagag
gtggaacccaaggccaccaaagacacggccatgagtggttga
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