Pyrenophora tritici-repentis: 6340092
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Entry
6340092 CDS
T10215
Symbol
PtrM4_007210
Name
(RefSeq) Smg4-UPF3 multi-domain protein
KO
K14328
regulator of nonsense transcripts 3
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03013
Nucleocytoplasmic transport
ptrr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
6340092 (PtrM4_007210)
03015 mRNA surveillance pathway
6340092 (PtrM4_007210)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6340092 (PtrM4_007210)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
6340092 (PtrM4_007210)
mRNA cycle factors
P-body specific factors
6340092 (PtrM4_007210)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
6340092
NCBI-ProteinID:
XP_065965036
UniProt:
A0A2W1I4Z4
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Position
1:1820834..1822749
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AA seq
594 aa
AA seq
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MAPQPGANGVLPVTLLQKNAPAQTPRGPKAAQPRLKLICRRLPPGLTKAEFIEALGDEWK
LGAGKIDWINYRKGKISTDAAKPSKPARAYIHVTKQDHVKVLGDHVRTITFHDATKSWQD
PVLVGPPTLEYAPYPKMPGGRRRNDNRQGTIDQDQEFKDFLESLTNPITKPAAPENEGQK
EKVKTTPLIEALREKKANRDKPSTKANRQGRGEGKEDVVERGEKKILAKPGKENALNAGD
KNRRLSKADKAQATKEAVKILNKEASSSKSAAATSNDKASSSPALERKRGNVAIAKSMLQ
RDLGVGPAPNRRRGTKREVGTAAPEAAVQAKESKVVEEKAKETPVAAPTAAPIEKAAQAN
RKERPTRAERRAFKANQGEKPNEKPATTEPKAQTAPKTPAPQILKKPQAAQTPTAPKGPG
ASRAPPTEPAAARNNTSTGQPLTTPAKAETTPGPVANNAPKAIPASPAPAPTSKQAFLKH
ANPSQGITEPLIEEAMKAYGGIDKVEIDKRKGFAYVDFAEPEGLQKAMAASPIKIAQGAV
QVLERKEKVARNPRFNGPPTGPARGGGRPAADTTSTAPAVPPPAAPVATANATT
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atggctccccagccgggcgccaatggcgtcctacccgtcacacttcttcagaagaacgcg
cctgctcaaacaccccgcggccccaaagcggcgcagccccgcctgaagctgatatgtcgc
cgactccccccaggcctcaccaaagccgagttcatcgaggccctcggtgatgagtggaag
ctaggagccggcaagattgactggatcaactacaggaagggcaagatctctacagatgcc
gccaaaccctctaaaccagcccgagcctacatacatgttacgaagcaggaccacgtcaaa
gtactcggcgaccatgttcgtaccattaccttccacgacgccacaaagtcctggcaagac
cctgtcctcgtcggccctccaactctcgaatacgccccctaccctaagatgcctggtgga
cgccgaaggaatgacaaccgccaaggcaccatcgaccaagaccaggagttcaaggacttc
ctcgagagcctcacaaaccccatcaccaagcctgccgcccccgagaacgaaggccaaaag
gaaaaggtcaagacgacgcctctgattgaagcgctgcgggagaagaaggctaatagggat
aagccgagcaccaaggcaaacagacagggacgtggagagggcaaggaagatgttgtagag
cgtggtgagaagaagatcctggccaaaccaggcaaggaaaatgctctcaatgccggagac
aagaaccgccgtctaagcaaagctgacaaggctcaagcaactaaggaggctgtgaagatt
ctcaacaaggaagcctcgtcctccaagtcggccgctgccacctcaaacgacaaagcctct
agcagtccagcacttgaacgaaagcgtggtaatgtcgcaatcgcaaaatccatgttgcaa
cgtgacctgggtgttggaccagctcctaaccgcagacgtggaacaaagcgtgaggttggc
acagctgcgcctgaagctgccgttcaagcaaaggagagcaaggtcgttgaagaaaaggca
aaggaaacaccagttgcagcacccactgctgctcctatagagaaggctgcccaggcaaac
agaaaggaacgcccaactagagcagagcgccgcgcattcaaggcgaaccagggcgagaaa
ccaaacgagaagcctgcaactactgagccaaaagctcaaacagcaccaaagactcctgcg
cctcaaatcctcaagaagcctcaagctgctcagactccgaccgccccgaagggtccaggt
gcctcacgagctccacctactgagcctgctgctgctagaaacaacactagtacaggccag
cccctgaccaccccagcaaaggcagagacaacgcctggtccagtggctaacaacgccccc
aaagctatacccgcatcacctgcgcctgcacctacgagcaaacaagcgttcctcaagcat
gcaaaccccagtcagggtatcaccgagcccctcatcgaagaggccatgaaggcatatgga
ggcattgacaaagtcgaaattgacaagcgcaaaggtttcgcctacgtcgactttgccgaa
cccgaaggcctgcaaaaggccatggctgccagcccgatcaaaatagctcagggcgcagtc
caagtgctcgagcgcaaggagaaggtggctaggaaccctcgcttcaacggcccaccaacc
ggccctgctcgtggcggcggtcgtcccgctgccgatactacgtctaccgctccagctgtt
cccccgcctgctgcacccgtagccacggccaatgctaccacgtga
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