Pyrenophora tritici-repentis: 6340285
Help
Entry
6340285 CDS
T10215
Symbol
PtrM4_009720
Name
(RefSeq) HolB, ATPase involved in DNA replication
KO
K10756
replication factor C subunit 3/5
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03030
DNA replication
ptrr03410
Base excision repair
ptrr03420
Nucleotide excision repair
ptrr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
6340285 (PtrM4_009720)
03410 Base excision repair
6340285 (PtrM4_009720)
03420 Nucleotide excision repair
6340285 (PtrM4_009720)
03430 Mismatch repair
6340285 (PtrM4_009720)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptrr03032
]
6340285 (PtrM4_009720)
03036 Chromosome and associated proteins [BR:
ptrr03036
]
6340285 (PtrM4_009720)
03400 DNA repair and recombination proteins [BR:
ptrr03400
]
6340285 (PtrM4_009720)
DNA replication proteins [BR:
ptrr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
6340285 (PtrM4_009720)
DNA Replication Termination Factors
ELG1-RFC complex
6340285 (PtrM4_009720)
Chromosome and associated proteins [BR:
ptrr03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
6340285 (PtrM4_009720)
DNA repair and recombination proteins [BR:
ptrr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
6340285 (PtrM4_009720)
Check point factors
HRAD17(Rad24)-RFC complex
6340285 (PtrM4_009720)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
Rad17
DNA_pol3_delta2
AAA_16
AAA_22
AAA_24
RCF1-5-like_lid
AAA_5
AAA_11
AAA_assoc_2
AAA_30
DUF815
RuvB_N
AAA_19
AAA_3
ResIII
Mg_chelatase
AAA_14
PhoH
DEAD
Sigma54_activat
SLFN-g3_helicase
AAA_28
bpMoxR
AAA_7
ATPase_2
AAA_18
AAA_25
nSTAND3
RNA_helicase
TniB
Motif
Other DBs
NCBI-GeneID:
6340285
NCBI-ProteinID:
XP_001930978
UniProt:
B2VSE1
LinkDB
All DBs
Position
1:2429018..2430293
Genome browser
AA seq
393 aa
AA seq
DB search
MSDFEDEMDVDAPTVDNSISFGGDQKKGKRSAANLPVEAEDSLPWVEKYRPNSLDDVEGH
KDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNASDDRG
IDVVREQIKTFSSTKQIFAAAPRAGDSSLATFKLIILDEADAMTATAQMALRRIMEKYTA
NTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVDKVIEDEKVNITQDATGSLVT
LSKGDMRRALNVLQACHASSTPLQPPGRPAVDPNTIVRDQITQTTIYDCIAAPHPSDIKY
ILETLLSKNDMTECLRTVNNLKIMKGLALADILTAVSEELVTNDVPPQVMVTWMSGLADI
EYRLSGGGSETIQTGAAIGVVRTGVELLENGKR
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgtccgactttgaagatgaaatggacgttgatgcgcctactgtggacaactcaataagc
ttcggcggagaccaaaaaaagggcaaacggagtgctgcaaatctgcctgtagaagctgaa
gactcactaccatgggtcgaaaagtacagaccaaactcgctagacgatgtagaaggtcac
aaggacataatagcaaccattaacaagtttgtcgactcaaaccgacttccccatctcctg
ctctatggcccaccaggaactggaaaaacctcaactgtcctcgcacttgcacgacgcata
tacgggaacaagaacatgcgacagatggtgctggagctgaacgcttcagatgatagaggt
atcgacgtcgtaagagagcagatcaagacgtttagtagcaccaagcaaatctttgctgcg
gcacccagggctggagattcgtcgctcgcaaccttcaagctcatcatccttgatgaggca
gatgccatgactgcgacggcccaaatggcactgcgacgtattatggagaagtatacagca
aacacacgcttctgtatcattgcaaactacacacacaagctctcaccagcactactctcg
cggtgtacgaggttccgattctctcctcttaaagaccaggacattaggaacttggtcgac
aaggtcattgaagacgaaaaggtcaacatcacacaggacgctacaggctcacttgtcacg
ttgagtaaaggagatatgaggcgagcacttaatgtgttgcaggcttgtcacgcttcgagc
acgccgcttcagccaccgggaaggccagcagtagacccaaacaccatcgtgcgtgatcag
atcactcagacgaccatctacgactgtatagcagccccgcatccctccgacatcaagtac
attctcgaaacgctactctcaaagaacgacatgaccgaatgtttacggacggttaataac
ttgaagataatgaagggactggcactggcagatattctcacagcggtcagcgaagagctc
gtcaccaacgatgtccctccgcaggtcatggtcacatggatgtcaggcctagcagacatc
gagtataggctaagtgggggtggtagtgaaaccatacagacgggcgcagcaattggtgtt
gtgaggacaggtgtagagctactagaaaatggaaagaggtga
DBGET
integrated database retrieval system
