Pyrenophora tritici-repentis: 6340368
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Entry
6340368 CDS
T10215
Symbol
PtrM4_010030
Name
(RefSeq) RNA14, Pre 3'-end processing (cleavage and polyadenylation) factor
KO
K12869
crooked neck
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
6340368 (PtrM4_010030)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptrr03041
]
6340368 (PtrM4_010030)
03036 Chromosome and associated proteins [BR:
ptrr03036
]
6340368 (PtrM4_010030)
Spliceosome [BR:
ptrr03041
]
Complex B
Other components
Prp19-related factors
6340368 (PtrM4_010030)
Complex C
6340368 (PtrM4_010030)
Chromosome and associated proteins [BR:
ptrr03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
6340368 (PtrM4_010030)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_14
HAT
Suf
TPR_19
TPR_CcmH_CycH
TPR_16
U3_assoc_6
Motif
Other DBs
NCBI-GeneID:
6340368
NCBI-ProteinID:
XP_001930998
UniProt:
B2VSG1
LinkDB
All DBs
Position
1:complement(2492007..2494116)
Genome browser
AA seq
683 aa
AA seq
DB search
MEKTSAPRIKNLAAAPIQISAEQLLREAVDRQDEKLKAPTQRFADLEELHEFQGRKRKEF
EDYVRRNRINMNNWMRYAAWELEQKEFRRARSIFERALDVDSTSVALWLRYIESEMKHRN
VQHARNLLDRAVTILPRVDKLWYKYVYMEETLGNIDGARSVFERWMQWEPEEAAWSSYIK
LEKRHGEFERCRAIFERFTVVHPEPKNWIKWAKFEEENGTSDLVRDVYGTAVTTLGDDFM
DEKLFMAYAKFEARLKELERARAIYKFALDRMPRSKSVNLHKAFTTFEKQYGDRDGIEDV
ILSKRRVHYEEQVKENPKNYDAWVDFARLEETSSNQDRVRDIYERAIAQIPPTQEKRHWR
RYIYLWLFYAVYEETVSRDIERTRQIYQECIRLLPHKRFTFAKVWLMFAHFEVRQGQLTT
ARKLLGQSLGMCPKDKLFKGYIELEMKLFEFNRCRQLYTKYIEWNGSNSQTWIKFAELER
GLDDLERARAIFELAVEEPQLDMPELVWKSYIDFEEGEGEYERTRALYERLLQKTDHVKV
WTSWAQFELSVPDETTAEDDETISEAAKSRAREIFTRAHTRLKEHELKEDRVALLSAWKS
FEDVHGSAEDKEKIEKQMPRKVKKRRKLDDDSFEEYVDYVFPADDESAAKLARLMANAQK
WKMAQAAQAAAGGNGESADGNGE
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggagaagacatctgctccacgtatcaaaaaccttgcggcggcgcccatacagatcagc
gcagagcagctgctacgagaagccgtcgaccgtcaagatgagaagcttaaagcgccaacg
cagcgctttgctgatctggaggagctgcacgagttccagggcaggaagcgcaaggaattt
gaggattatgtgcggcggaaccgcatcaacatgaacaactggatgcgctatgctgcctgg
gaattggaacagaaggaattcagacgtgcacgctccatcttcgaacgagccctcgatgtc
gactcgacaagcgtggccctgtggttgcggtatattgagtctgaaatgaagcatcggaac
gtccagcatgcgcgcaacctcctcgatcgtgccgtcaccattcttccgcgagttgataag
ttatggtacaaatatgtttacatggaggagaccctcggcaacatcgatggtgcaaggtct
gttttcgaacgctggatgcaatgggagcccgaagaggcagcatggagttcatacatcaag
ctggaaaagagacacggtgaattcgagagatgtcgagccatattcgagcgatttaccgtt
gtgcatcccgagccaaagaattggattaaatgggccaagtttgaggaagagaatggcaca
agcgatcttgtacgcgacgtttacggaacagctgttaccacacttggcgatgacttcatg
gacgagaagctattcatggcatacgccaagttcgaagcgaggcttaaggagctagaacga
gcccgagccatttacaagtttgctctggatcgtatgccacgatcaaagtctgtcaatttg
cacaaggcctttacgacctttgagaagcagtatggagatcgggacggtattgaagacgtt
atattgtcgaaacgccgggttcactatgaagagcaggtgaaagagaatcccaaaaactac
gatgcatgggtcgactttgcacggctagaagagacatctagcaatcaggaccgagtgcga
gacatttacgagcgagcgattgcacagataccaccgacacaggagaagcgccattggaga
cgatacatctatctctggctgttctatgccgtctatgaggagactgtttcacgcgacatt
gagcggacacgccaaatatatcaagagtgcatacgcctgcttccgcacaagcgcttcact
tttgccaaagtatggctgatgtttgcacactttgaagttaggcagggccaacttacaaca
gcacgcaagctcttgggtcagagtctgggcatgtgcccaaaggacaaactgttcaaaggc
tacattgagttggaaatgaagcttttcgagttcaaccgttgccggcaactctataccaaa
tacattgagtggaacggatcgaattctcagacctggatcaagtttgcggaattagagcgt
ggtcttgatgaccttgaacgcgcacgcgccatcttcgagcttgccgtggaggagccgcag
ctagacatgcctgaactggtctggaaatcctacatagacttcgaagaaggtgaaggcgag
tacgaacgcactcgtgcactatacgagcgtctgctgcagaagacggaccacgtcaaggta
tggacttcatgggcacagtttgaactcagcgtgcccgatgagaccactgccgaagacgac
gagacgatcagcgaggccgccaaatcacgtgctcgcgaaatcttcacgcgtgcccacaca
cgtctcaaggaacacgagctcaaagaagaccgcgttgcccttctcagcgcctggaagtcg
tttgaggatgttcatggtagtgcagaagacaaggagaagattgagaaacagatgccgcgc
aaggttaagaagagaagaaagttggacgacgacagtttcgaggagtatgtggactatgtg
ttccctgcagacgacgagagtgcggcgaaattggcaagactcatggcgaatgcgcaaaag
tggaagatggcgcaggccgctcaagctgcggctggaggaaatggagagagtgcagatgga
aatggcgagtag
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integrated database retrieval system
