Pyrenophora tritici-repentis: 6340481
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Entry
6340481 CDS
T10215
Symbol
PtrM4_002710
Name
(RefSeq) MSL5, Splicing factor (branch point binding protein)
KO
K13095
splicing factor 1
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
6340481 (PtrM4_002710)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptrr03041
]
6340481 (PtrM4_002710)
Spliceosome [BR:
ptrr03041
]
Complex A
Other components
Complex A specific factors
6340481 (PtrM4_002710)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
zf-CCHC
KH_1
zf-CCHC_4
zf-CCHC_6
zf-CCHC_3
zf-CCHC_2
Zn_Ribbon_Prim
CCDC93_CC
Motif
Other DBs
NCBI-GeneID:
6340481
NCBI-ProteinID:
XP_065964853
UniProt:
A0A834S5W2
LinkDB
All DBs
Position
1:<725316..>727296
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AA seq
514 aa
AA seq
DB search
MSWRNQGITGSNNIPLGTRRRFGGENDDGGYNPAAPAEGLSELKRGRSPERTSSTDGPRQ
RKKRNRWGDVKDNKAAGLMGLPTHIQAPMTTEQLDAYTLYLRIEEISQKLKINDVVPADG
DRSPSPPPQYDNFGRRVNTREFRYRKRLEDERHKLVEKAMKTLPNYHPPADYRRPTKTQE
KVYVPVNDYPEINFIGLLIGPRGNTLKKMETESQAKIAIRGKGSVKEGKGRSDAAHTSNQ
EEDLHCLIMADTEEKVNKAKKLIHNVIETAASIPEGQNELKRNQLRELAALNGTLRDDEN
QACQNCGEIGHRKYDCPQKQNFTASIICRVCGQAGHMARDCPERKVGQPWRNDNRLGDRG
QAGQGRIGGAPENELDAFMAEMGGAPGAPRAAIEYNDNGGAGGDNYGGGERTVKPWERGP
SGGAAPWARNDDDRGRGDSNSTAPPPWAGGGGGRGAQSYDQGYVRALPVLTLVLLAMALL
LPALLQVLVLSSSPMALLVAPRRRLVLFLLRLPG
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtggcgcaaccagggcatcaccggctccaacaacatccctttgggaactcgccgt
cgtttcggaggtgagaatgatgatggcggttataatcccgcagctcccgccgagggtcta
tctgagctgaagcgcggccgcagcccagagcgcacctcctccaccgacggtccgcgacag
cgcaagaagcgcaaccgatggggcgatgtcaaagacaacaaggctgctggactgatgggc
ttgcctactcacattcaggctcctatgaccactgagcagctcgacgcgtatactttgtat
ctgcgcatcgaggagattagccagaagctcaagatcaacgatgtcgttcccgcagacggc
gatcgatccccgtcgcccccgccgcagtacgataactttggacgtcgtgtcaacacgcgc
gagttccgctatcgaaagcgcctcgaagatgagcgtcacaagcttgtcgaaaaggccatg
aagacgcttcctaactaccacccacctgccgactacaggcgccctactaagacacaggag
aaggtgtatgttccggtcaatgactatccggagattaactttattggactactcattggc
ccccgtggaaatacactcaagaagatggagacagaatctcaggccaagattgcgattcga
ggcaagggctccgtcaaggagggtaagggacgttctgacgcggcccataccagcaatcag
gaggaggatcttcactgcttgatcatggcagacactgaagagaaagtcaacaaggccaag
aagcttatccacaacgtcattgagacggctgcctccatccccgaaggccagaacgaactc
aagcgcaaccagctccgtgagctcgccgccctgaacggtacccttcgcgacgacgaaaac
caggcctgccagaactgtggtgagattggtcatcgcaagtacgactgtcctcagaagcag
aacttcacggccagcatcatctgtcgtgtctgtggtcaagctggtcatatggctcgcgat
tgccccgagcgcaaggttggtcagccgtggcgcaacgacaaccgtctcggcgatcgtggc
caggcaggtcaaggccgtatcggcggtgctcccgagaacgagctcgacgctttcatggcc
gaaatgggcggtgcccctggagcaccccgtgccgcgatcgagtacaacgacaatggtggt
gcgggcggagacaattacggaggtggcgagcgcactgtcaagccttgggagcgtggccct
agtggcggtgctgcaccctgggcgcgtaacgacgacgatcgtggtcgtggcgacagcaac
tcgaccgctcctcctccttgggctggcggtggtggcggacgtggcgcgcagtcgtacgac
cagggctatgtgcgggcgctcccggtgcttacgctggtgctcctggctatggcgctcctc
ctcccggccctcctccaggtcttggtcctctcttccagtcctatggcgctgctggtagcc
ccccgccgccgtctggttctgttcctcctccgcctccccgggtga
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