Pyrenophora tritici-repentis: 6340751
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Entry
6340751 CDS
T10215
Symbol
PtrM4_060750
Name
(RefSeq) NOT5, CCR4-NOT transcriptional regulation complex, NOT5 subunit
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
6340751 (PtrM4_060750)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6340751 (PtrM4_060750)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
6340751 (PtrM4_060750)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
6340751 (PtrM4_060750)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
WKF
LIL3_
HR1_TOCA
EAD9
Gal_mutarotas_2
Chal_sti_synt_C
CorA
Motif
Other DBs
NCBI-GeneID:
6340751
NCBI-ProteinID:
XP_001932862
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All DBs
Position
2:complement(<1595998..>1598046)
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AA seq
631 aa
AA seq
DB search
MAARKLQQEIDKCFKKVAEGVATFESIYEKIMQTGNPSQKEKLEDQLKKEIKKLQRSRDQ
IKTWAAMSEIKDKKPLLDHRKLIETQMERFKAVEKEMKTKAYSKEGLQLASKIDPKDKEK
MEMVEFLQHMNEELERQIETIEAEIETLQANVKKSKKGDNSKAERVTELEESVERNKWHQ
GKLDLLQRALENGNVETDQVKEIEESIKYYVESNQDAEFMDDDTIYDDFNLQEEEAIFGL
GESLDHVSSHESQSIADDTPETEARPPPPKPKATEAVQQGARRPSTQMKSPLPALATLHT
PLPGASSTTANAMKPAPLPTRTPGEPLKYASAAAAAAASDKNGVGIAPLPPPPGAAAAQS
GLAPGAPRTSATTSPATTHSQPASRIQPAESAQASPAPAASIPATPAHDKESLSRAVSSE
DASKSSRRTPAPEPVEEEGLQVATPPLTNGESHAEDEEEESVYHLPSSLQDLLDSFEATK
NDMSASASKPPNEHMLAASMTTAPDSADTEAPRHYRPQNPYPFTPAHYPQEPLPIFDDPR
LYSRIDTDALFYAFYYRQGTYQQYLAAKALKSQSWRFHKQYQTWFQRHEEPKAITEDYEQ
GTYRFFDYESTWMNRRKADFRFAYKFLEDEL
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggcggcacggaaactccagcaagagattgacaaatgcttcaagaaggtcgccgagggc
gtcgcaacctttgagagcatatacgagaaaattatgcagacgggcaatccgtcgcaaaag
gagaagctggaggaccagctgaagaaggagatcaagaagttgcagcgatcgcgcgaccag
atcaagacatgggccgccatgtcggagatcaaagacaagaagccgctgctcgaccaccgc
aagctgattgagactcaaatggagcgcttcaaggctgtcgaaaaggagatgaagaccaag
gcctactccaaggaaggcctgcaattagcgtccaagatcgaccccaaggataaggagaag
atggagatggtcgagttcctgcaacacatgaacgaggagctggagcggcaaatagaaacc
atcgaggcggagatcgagacgctgcaggcaaacgtcaagaaatcaaagaagggcgacaac
tcaaaggcggagcgggtgacggaactagaagagtcggtcgagcgaaataaatggcaccaa
gggaagctggatctgctgcaaagggcgctggagaatggaaatgtcgaaacggaccaggtc
aaggagatcgaagagagcatcaaatactacgtggagagcaaccaagacgccgagttcatg
gacgacgacacaatatacgacgacttcaacctgcaagaggaggaggccatctttggcttg
ggcgagagtctcgatcacgtctcgtcacacgaatcgcagtcgatagcggacgacaccccg
gagacggaagcgcggccaccaccgccgaaaccaaaggcaacagaggcagtgcagcaggga
gcacgacggccatcgacacagatgaaatcgccattacctgcactagcgacattacacacg
cccctgccgggagcatcgagtaccacagcaaacgccatgaagcccgcgccattacccaca
cgtacgcccggcgagccactgaagtacgcctcggccgccgctgctgctgctgcaagcgat
aagaatggagtgggcattgctccgttgcccccaccgccgggagcggccgcagcacaatct
ggtctggctccaggcgccccacggacaagtgcaactacctcgcctgcaacaacgcattcc
cagccagcctcgcgtatacagccggcagaatcagcacaggcctcaccagcacctgcggca
agtatacccgcgacgcctgcgcacgacaaggaatcgctttcgcgagccgtctcgtctgaa
gatgcctcaaagtccagcagaaggactccggcccctgagccagtagaggaggaaggattg
caagttgctacgccgcccttaacgaatggcgagtcacatgccgaagacgaagaagaggag
tcagtctaccacctcccttccagcttacaggatttgctggattcattcgaggccaccaag
aacgacatgtctgcatctgcatcgaagcctccaaacgagcacatgctcgcagcgtccatg
actactgctccagactctgcagataccgaggcgccccgccactaccgcccccagaatccg
tacccgtttacgcctgcccactacccgcaagaaccgttgccaatcttcgatgatccccgc
ttgtactctcgcatcgatactgatgctctcttttatgcattttactaccgtcagggaacg
tatcagcaatatctggcagcaaaagcattgaagtcgcaaagctggagattccataagcag
taccaaacatggttccagcgccatgaagagccaaaggcgataaccgaggactatgagcaa
gggacatacaggttctttgactatgaaagcacgtggatgaaccgtaggaaagcagacttt
cgctttgcgtacaaattcctggaagacgagctatga
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