Pyrenophora tritici-repentis: 6340788
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Entry
6340788 CDS
T10215
Symbol
PtrM4_061140
Name
(RefSeq) SrmB, Superfamily II DNA and RNA helicase
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
ptrr Pyrenophora tritici-repentis
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptrr03041
]
6340788 (PtrM4_061140)
03009 Ribosome biogenesis [BR:
ptrr03009
]
6340788 (PtrM4_061140)
Enzymes [BR:
ptrr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
6340788 (PtrM4_061140)
Spliceosome [BR:
ptrr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
6340788 (PtrM4_061140)
Ribosome biogenesis [BR:
ptrr03009
]
Eukaryotic type
90S particles
Helicases
6340788 (PtrM4_061140)
Pre-60S particles
6340788 (PtrM4_061140)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
6340788
NCBI-ProteinID:
XP_065964159
UniProt:
A0A2W1GNC5
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All DBs
Position
2:<1702882..>1704816
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AA seq
539 aa
AA seq
DB search
MSPTAVDSSNKRKRSHKSKKVAEVAVPAHNGVEKARKKARKEREAEAVVEEPIVENDTEE
EDSDEEAEEKSAEAIDGMGFKTMTEIQQKAIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE
MLSQLRFKPRNGTGVIVVSPTRELALQIFGVARELMEHHSQTFGICIGGANRSAEADKLR
KGVNLLIATPGRLLDHLHNTQGFVFKNLRSLVIDEADRILEVGFEDEMRSIIKILPTERQ
TMLFSATQTTKVEDLARISLKAGPLYINVDHRAEHSTVQGLEQGYVLCDSDTRFRLLFSF
LKKHQKKKVIVFLSSCASVDFYSELLNYIDLPVLGLHGKLKQQARTNRFFEFVNAQSGTL
ICTDVAARGLDIPEVDWVIQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLLPSEVGFLK
LLKESRVPLVEFELPANKILNIQSQLEALISKNYYLNKSAKDGYRSYLQSYASHSLRSVF
DVNKLDLVKVAKSFGFSTPPRIDITLGAGLSRDKKVEGRRAYGSQPQQGRRPMKPGKRF
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccaccgcagtcgattcgagcaacaagagaaagaggtctcacaagagcaaaaag
gtcgcagaagtagctgtgccggcgcataatggcgtagagaaggcgcgcaagaaggctcgc
aaggaaagagaggccgaagccgttgtggaggagcctattgttgaaaacgatactgaagag
gaagatagcgacgaggaggctgaggagaaatctgcagaggccattgacggcatgggattc
aagactatgacggagatccaacagaaagctatcccgcctcttcttgctggtagggatgtg
ctcggtgcggccaagactggcagcggaaaaacgctggcctttctcattcctgccatagaa
atgctgtcacaactgcgcttcaaaccgcgcaatggtacaggtgtcatcgttgtgtcgcct
acaagggagctggccctgcagatcttcggagttgcgcgcgagctcatggagcaccactca
caaacatttggtatctgcatcggaggagccaatcgaagcgccgaagccgataaattgaga
aagggagtgaacctactcattgccacacctggtaggctgttggatcacttgcacaacacg
cagggattcgtctttaagaacctgagatctctcgttatcgacgaagcagaccgtatcctc
gaggttggattcgaagatgaaatgaggtcgatcatcaagatcttgcccaccgagcgtcaa
acgatgctgttttctgccacacagacgacaaaggttgaggatctcgcgagaatctcgctc
aaggccggtcctctttacatcaacgtcgaccaccgagccgagcacagcactgtgcaagga
ttggagcagggctacgtcttgtgcgactcggacaccagattcagactcctcttcagtttc
ctgaagaaacaccaaaagaagaaggtcattgtcttcttgtcgtcatgcgcatctgtggac
ttttacagcgaattgctcaattacatcgacctgcctgttttgggactgcatggcaagctc
aagcaacaggcgcggacgaaccgcttctttgagtttgtgaatgctcagagtggcacgctc
atttgcacagacgtcgctgctcggggtttggatatccccgaggtggattgggtaattcag
tttgacccaccagacgacccaagggattatattcaccgagtgggacgaactgcaagaggc
gccaacggtaaaggacgaagtttgatgttccttctaccgtcagaggttggcttcctgaaa
ctgctgaaggaatcgcgtgtgccgcttgttgagtttgagctgccagcaaacaagattctg
aatattcaatctcaactagaagcgctcatctcgaagaactactacctcaacaagagcgcc
aaagatgggtaccgatcatatctccagagttatgctagccacagcctgcgttcggtcttt
gacgtgaacaagcttgacctagtaaaagttgcgaagagctttggcttctcaacgccgcca
aggatcgacatcactctaggagcggggttgagtcgcgacaagaaggtagagggccggaga
gcatatggaagccaaccgcagcagggacggcggcccatgaagccaggcaagaggttttga
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