Pyrenophora tritici-repentis: 6341620
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Entry
6341620 CDS
T10215
Symbol
PtrM4_070170
Name
(RefSeq) SrmB, Superfamily II DNA and RNA helicase
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
6341620 (PtrM4_070170)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6341620 (PtrM4_070170)
03036 Chromosome and associated proteins [BR:
ptrr03036
]
6341620 (PtrM4_070170)
Enzymes [BR:
ptrr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
6341620 (PtrM4_070170)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
6341620 (PtrM4_070170)
mRNA degradation factors
5'-3' decay
Decapping complex
6341620 (PtrM4_070170)
Chromosome and associated proteins [BR:
ptrr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
6341620 (PtrM4_070170)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
QSregVF
NA-iREase2
CMS1
Motif
Other DBs
NCBI-GeneID:
6341620
NCBI-ProteinID:
XP_065964512
UniProt:
A0A2W1DEF9
LinkDB
All DBs
Position
2:<4095618..>4097376
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AA seq
517 aa
AA seq
DB search
MTTEMTNQMAATKLGDAAPSGEADWKAGLQAPAKDARPQTEDVTATKGLEFEDFYIKREL
MMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERVNPKSPKTQA
LILVPTRELALQTSQVCKQLGKHLNINVMVSTGGTGLKDDIIRLSDPVHIIVGTPGRILD
LAGKGVADLSACQTFVMDEADKLLSPEFTPVVEQLLGFHPKDRQVMLFSATFPIVVKSFK
DKHMNSPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLFNKLQINQSIIFCNSTNRVE
LLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVIN
FDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYRIEQELGTEIQPIPQVIEKNL
YVYESPESIPRPMSNQQRAPGQGQPQDQEGAARGNPNARVSGTASGAPTEPAEPSTERPE
CSAKSKAATYRPTTGFLEQPTKSGGSWLSGRLIGHGM
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgactacagagatgaccaaccaaatggcggcaacgaagcttggcgatgccgcaccttca
ggagaagccgattggaaagcaggtcttcaagcgcccgcaaaggatgcgcggccacaaaca
gaggatgttactgcaacaaaaggcctagaattcgaagacttttacatcaagcgcgagctc
atgatgggcatcttcgaggccggattcgagaagccatcgcccatccaagaagagacgatc
cccgtagccctcacgggtcgagacatccttgcgcgagccaagaacggcaccggaaagact
gctgcgtttgtcatccccacactcgagcgcgtcaaccccaagagcccaaagacacaagct
ctcatcctcgtaccgacccgagaactcgcactacaaacctcacaagtatgcaagcaattg
ggcaagcacctcaacatcaacgtcatggtatccacgggtggcacgggcctcaaggacgac
attatacgattaagcgatcccgtgcatatcatcgtcggcacgcccggtagaatcctcgat
ctggctggtaaaggcgtagccgatctttcagcttgtcaaacctttgtcatggatgaagct
gacaagctcctatcacccgaattcacccctgtagttgaacaactgctcggcttccacccc
aaagaccgccaggtcatgctctttagtgccacctttcccattgttgtcaagagcttcaag
gacaaacacatgaactcgccgtacgaaatcaacttgatggatgagctgacgctgcgcggt
atcacgcagtactatgccttcgtcgaggagaagcagaaagtgcactgcttgaatactcta
ttcaataagctccagatcaaccagtcaattatcttctgcaactccacaaaccgcgttgag
cttctcgccaagaagattaccgagctcggatactcttgcttctattcgcatgctcgcatg
ctccagcataaccgtaatcgtgtcttccacgacttccgcaatggcgtatgccggaatctg
gtttgctcggatttgctgacccgtggtattgatatccaggcggtcaatgtcgtcatcaat
ttcgacttccccaagaacgcagagacgtatttgcatcgcattggtcgatctggccgcttc
ggacacctgggtttggctatcaacctcatcaactgggaagatcggttcaatctttatagg
atcgaacaagagcttggcaccgaaatccagcctattccccaggtcatcgagaagaaccta
tatgtctacgagtcacctgagtcgatccctcgacccatgtctaatcaacagcgcgctcct
ggacaaggtcaaccacaggaccaagaaggtgctgcgcgcggaaaccccaacgcccgtgtt
tcagggacagcgtcgggggctcccaccgaaccagcagaaccgtcaacagaacggccagaa
tgctcagcgaaatccaaggccgcaacctaccggcccaccacaggcttcttagagcagcct
accaaatccggtgggagctggctttctgggcggttaattggccacggaatgtga
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