KEGG   Pyrenophora tritici-repentis: 6342070
Entry
6342070           CDS       T10215                                 
Symbol
PtrM4_094790
Name
(RefSeq) WD40 repeat protein
  KO
K12601  superkiller protein 8
Organism
ptrr  Pyrenophora tritici-repentis
Pathway
ptrr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ptrr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    6342070 (PtrM4_094790)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptrr03019]
    6342070 (PtrM4_094790)
Messenger RNA biogenesis [BR:ptrr03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     6342070 (PtrM4_094790)
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WDR55 EIF3I WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_TEP1_2nd Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st Beta-prop_Vps41 NBCH_WD40 Beta-prop_DCAF12 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_Nup120_160 WD40_RFWD3 Beta-prop_SPT8 Beta-prop_TEP1_C eIF2A WDR54
Other DBs
NCBI-GeneID: 6342070
NCBI-ProteinID: XP_001934167
UniProt: A0A834RY59 B2W336
LinkDB
Position
4:1793277..1794458
AA seq 332 aa
MVRRSFQPRFCSNNVQSKQYLTLHTVDSAHPKASDVFAVAPTTTQLLSASGASSINVYDT
TQPEFPIIQTLEKAHPLGIHHLVTAREEKARRAASAGFEGKVKIWSQNEDGVWSEDGEIV
DQNKPGEIWAIALSADGQYLASTSINGKINVWSLNKDEGMPRIREYETKGSFGMCVDLSR
NGSFTASGHENGSIYVFNNETGRLAHSLAGLVHPVRSVAFSPASKLLAAGGDARIIALYD
VTSGEQVANFTGHGGWVLSLDWSDTGEYLLSGSHDSKAKVWRIETRTCVATHSHGDKPLW
SAKWLPKVPTKSEMFALAGGNNSISFYREAAG
NT seq 999 nt   +upstreamnt  +downstreamnt
atggtacgaagatcgttccaacctcgcttctgttctaacaacgtccagtcgaaacaatac
cttactcttcacacagtcgactcggcgcatccaaaagctagcgatgtattcgccgtagcg
ccgaccaccacacagctgctgtcagcctctggcgcaagtagcatcaacgtttacgacacc
acgcaacccgagtttccaatcatacagacacttgaaaaggcgcatccactcggtatacac
caccttgtaaccgcacgggaagagaaggcgcgacgggccgcgagtgctggcttcgagggc
aaggttaagatatggagtcaaaatgaagatggtgtatggagcgaggacggagagattgtt
gaccagaacaagccgggtgagatatgggccattgcgctcagcgcagatggacaatacctc
gcgagtaccagtatcaacggcaaaatcaatgtgtggagcttgaacaaagatgagggcatg
cctcggatacgcgagtacgagacaaagggtagtttcggcatgtgtgtggacttgagtcgc
aacggtagcttcacagcctcagggcacgagaacggatcgatatacgtcttcaacaacgag
accggacgcctcgcacattccttggctggcctcgtacatccagttcgcagcgtagccttc
tcaccagcttcaaaactgttagcagcaggaggtgatgcaaggataatcgcactctacgac
gtcacttcgggcgagcaggtggcaaacttcaccggacatggaggttgggtgctcagcctg
gattggagcgataccggcgagtacctactttcaggatcacacgattcaaaagcaaaagtc
tggcgcatcgaaacgaggacttgtgttgcaacacactctcacggtgacaagcctctttgg
agcgcaaaatggttaccaaaggttccaactaaaagcgagatgttcgcactagcaggagga
aataactcgatcagtttctacagggaggccgcgggttaa

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