Pyrenophora tritici-repentis: 6342070
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Entry
6342070 CDS
T10215
Symbol
PtrM4_094790
Name
(RefSeq) WD40 repeat protein
KO
K12601
superkiller protein 8
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
6342070 (PtrM4_094790)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6342070 (PtrM4_094790)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
6342070 (PtrM4_094790)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR19_1st
Beta-prop_Vps41
NBCH_WD40
Beta-prop_DCAF12
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_Nup120_160
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_TEP1_C
eIF2A
WDR54
Motif
Other DBs
NCBI-GeneID:
6342070
NCBI-ProteinID:
XP_001934167
UniProt:
A0A834RY59
B2W336
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Position
4:1793277..1794458
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AA seq
332 aa
AA seq
DB search
MVRRSFQPRFCSNNVQSKQYLTLHTVDSAHPKASDVFAVAPTTTQLLSASGASSINVYDT
TQPEFPIIQTLEKAHPLGIHHLVTAREEKARRAASAGFEGKVKIWSQNEDGVWSEDGEIV
DQNKPGEIWAIALSADGQYLASTSINGKINVWSLNKDEGMPRIREYETKGSFGMCVDLSR
NGSFTASGHENGSIYVFNNETGRLAHSLAGLVHPVRSVAFSPASKLLAAGGDARIIALYD
VTSGEQVANFTGHGGWVLSLDWSDTGEYLLSGSHDSKAKVWRIETRTCVATHSHGDKPLW
SAKWLPKVPTKSEMFALAGGNNSISFYREAAG
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggtacgaagatcgttccaacctcgcttctgttctaacaacgtccagtcgaaacaatac
cttactcttcacacagtcgactcggcgcatccaaaagctagcgatgtattcgccgtagcg
ccgaccaccacacagctgctgtcagcctctggcgcaagtagcatcaacgtttacgacacc
acgcaacccgagtttccaatcatacagacacttgaaaaggcgcatccactcggtatacac
caccttgtaaccgcacgggaagagaaggcgcgacgggccgcgagtgctggcttcgagggc
aaggttaagatatggagtcaaaatgaagatggtgtatggagcgaggacggagagattgtt
gaccagaacaagccgggtgagatatgggccattgcgctcagcgcagatggacaatacctc
gcgagtaccagtatcaacggcaaaatcaatgtgtggagcttgaacaaagatgagggcatg
cctcggatacgcgagtacgagacaaagggtagtttcggcatgtgtgtggacttgagtcgc
aacggtagcttcacagcctcagggcacgagaacggatcgatatacgtcttcaacaacgag
accggacgcctcgcacattccttggctggcctcgtacatccagttcgcagcgtagccttc
tcaccagcttcaaaactgttagcagcaggaggtgatgcaaggataatcgcactctacgac
gtcacttcgggcgagcaggtggcaaacttcaccggacatggaggttgggtgctcagcctg
gattggagcgataccggcgagtacctactttcaggatcacacgattcaaaagcaaaagtc
tggcgcatcgaaacgaggacttgtgttgcaacacactctcacggtgacaagcctctttgg
agcgcaaaatggttaccaaaggttccaactaaaagcgagatgttcgcactagcaggagga
aataactcgatcagtttctacagggaggccgcgggttaa
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integrated database retrieval system