Pyrenophora tritici-repentis: 6342161
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Entry
6342161 CDS
T10215
Symbol
PtrM4_093810
Name
(RefSeq) Superfamily II RNA helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
6342161 (PtrM4_093810)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6342161 (PtrM4_093810)
03041 Spliceosome [BR:
ptrr03041
]
6342161 (PtrM4_093810)
03009 Ribosome biogenesis [BR:
ptrr03009
]
6342161 (PtrM4_093810)
03016 Transfer RNA biogenesis [BR:
ptrr03016
]
6342161 (PtrM4_093810)
Enzymes [BR:
ptrr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
6342161 (PtrM4_093810)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
6342161 (PtrM4_093810)
Spliceosome [BR:
ptrr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
6342161 (PtrM4_093810)
Complex C
U4/U6.U5 tri-SnRNP related factors
6342161 (PtrM4_093810)
Ribosome biogenesis [BR:
ptrr03009
]
Eukaryotic type
Pre-60S particles
Helicases
6342161 (PtrM4_093810)
Transfer RNA biogenesis [BR:
ptrr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
6342161 (PtrM4_093810)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
eIF3_p135
nSTAND3
Helicase_dom4_arc
DUF5388
Motif
Other DBs
NCBI-GeneID:
6342161
NCBI-ProteinID:
XP_001934258
UniProt:
B2W0E0
LinkDB
All DBs
Position
4:1585610..1588980
Genome browser
AA seq
1054 aa
AA seq
DB search
MDDDMFDVFEGGPSKDAAPRKNKKRQANGDVKSPMPVEDSAMSDAPTEQQDGTSEAKKKQ
KRDAEPEPIVTDDFETEQSREVAAAAGLQAQSQEGQAVVLSHQVRHQVALPPDYDYVPIN
EHKPPQEPARTWPFTLDPFQQVSIASIQRNESVLVSAHTSAGKTVVAEYAIAQCLKNNQR
VIYTSPIKALSNQKYREFMAEFGDVGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMR
EVAWVVFDEVHYLRDPARGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKNHSQPC
HVVYTDFRPTPLQHYFFPAGAEGIHLVVDEKGVFREENFQKAMSSIADKAGTDSKDFLAK
RKGKGKDKKTNTGGNKDQTDIYKIVKMIMVKSYNPVIVFSFSKRECENYALAMSSLAFND
DSEKAMVTKVFNSAIEMLSEEDRQLPQIQHILPLLRRGIGVHHSGLLPILKETIEILFQE
GLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVAQRWVTPSEFIQMSGRAGRRGLDDRG
IVIMMINEQMEPAVAKEIVRGQQDNLNSAFHLGYNMILNLMRVEGISPEFMLERCFFQFQ
STAGVSHLEKQLEELEHEKANTNIVDEPAIKEYYNLRQQLDAHTKDMRDVIMQPTYCLQF
LQGGRLVKIKYKDFDFGWGAVVAFTPRKGNKGEIFPPHESYIVDVLLPVASDTKFAPAVN
DGLPPGVRPPTAGDKGKMEVVPVVLNCIESIGHLRVFLPNELKSAEQRNNVRKALAEVKK
RFPDGIAILDPIENMNIKDDSFKKLLRRIEVLESRLLTNPLHNSPRLPELYSQYAQKIAI
GEKIKNVRKEIANALSVIQLDELKSRKRVLRRLGFIDEADVVQLKARVACEISTGDELVL
SELLFNRFFNELTPEQCAACLSCFIFEEKTQEVPALKEELAKPYREIQQQARVIAKMSQE
SKLAVNEEEYLKTFKYELMEVVYAWSKGATFAQICKMTDVYEGSLIRLFRRLEELLRQIA
QAAKVMGSEELEQKFTASLELVRRDLVAAQSLYL
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgatatgtttgacgtcttcgagggcggcccgtccaaggacgctgctcccagg
aagaacaaaaagcgccaggcaaatggcgatgtcaaatcgccaatgccggtggaggactcc
gccatgtcagacgcgcccacagagcagcaagatggcacgagtgaagcgaagaagaagcaa
aagcgcgatgcagagcctgagcctatagtcacggatgatttcgagacggaacagtcgcgc
gaggtggccgcagctgcaggactacaggcgcaatcacaagaaggccaggcagtggtgctt
tcgcatcaggtgcgccatcaggtcgcccttccgcccgactacgattatgtccccatcaac
gagcacaagcctccgcaggagccggcccgcacctggccctttaccctagatcctttccag
caggtctctatcgcgtccatacagcgtaacgagagtgttttagtctcagcgcatacctca
gctggaaagacagtggtagcagaatacgccattgcgcaatgtctgaagaacaaccagcga
gtcatctacactagtcctatcaaggcgctgagcaaccaaaagtaccgagagttcatggca
gagtttggcgatgtcggtctcatgacgggtgatgtcaccattaacccgactgcgacctgt
ttggtcatgactactgagattttgcgctctatgctgtacagaggttccgagatcatgcgc
gaggtagcctgggtcgtattcgacgaggtacattacctgcgcgacccagcgagaggtgtc
gtgtgggaggagactatcatcttgctccctgacaaggtccgctacgtcttcctctccgcc
accattccgaacgccatgcagtttgcagaatggatcaccaaaaaccacagccagccatgc
cacgtcgtctacaccgattttcgcccgactccgctacaacattacttcttccccgccggc
gcagaaggcatacacttggtagtggacgagaagggtgtgtttcgcgaagagaacttccaa
aaggccatgtcatccatcgcagacaaggccggcaccgattccaaggacttcctagccaaa
cgcaagggcaagggcaaggacaagaagaccaacacaggcggcaacaaggaccagacggat
atctacaagattgtcaagatgatcatggtcaagagctacaatccagtcattgtcttcagc
ttcagcaagagggaatgcgagaactatgcgctcgccatgagctcgctcgcattcaacgac
gactcggaaaaggccatggtgacaaaggtcttcaacagcgccatcgagatgttgtcagag
gaggaccgacagttgccccagatccagcacatcttgcccctgctccgaagaggtatcggt
gttcatcactccggactgctgcccatcctaaaggagacgattgagattttgttccaggag
ggtctgatcaaagtgctgtttgcgaccgagaccttctccattggactcaacatgccggcg
aagactgttgtattcaccagtgtgcgcaagtttgatggagtagctcaacgatgggtgaca
ccttccgagttcattcagatgtctggtcgtgctggacgtcgtggtctcgatgatcgtggt
attgtcattatgatgatcaacgagcagatggagcctgctgtggctaaggagattgtgcgc
ggacaacaggacaacctgaactctgctttccacttgggctacaacatgattctcaacctt
atgcgagtagagggcatttctcccgagttcatgttggagaggtgcttcttccagttccaa
agtacagctggtgtctctcatctggaaaaacaacttgaggagctcgagcacgaaaaggca
aacaccaacattgtcgatgagccggctatcaaggagtattataacctgcgacagcaactc
gacgcccataccaaggacatgcgcgatgtcatcatgcagccgacatactgtttacaattt
ctgcagggtggccgcctagtcaagatcaagtacaaggacttcgactttggctggggcgcg
gtagtagcgttcacacctcgcaagggaaacaagggcgaaattttcccgcctcacgagtcc
tacatagtcgatgttctgctaccggttgcgagcgacaccaagtttgcgccagcagtgaat
gacggattgccccctggcgtccggccaccaacagctggcgacaagggcaagatggaggtt
gttcctgtggtgctaaactgtatcgaatcgattggccatctccgtgtatttttgccaaat
gagcttaagtcggcggagcagaggaacaatgttcgcaaggcgctggctgaggtcaagaaa
cgtttcccagacggaatcgccattctggatcccattgagaacatgaacatcaaggacgac
agcttcaagaagcttctcaggaggatcgaggtgctagaatcccggctgctcacaaaccct
ctccacaactcgccgaggctacctgagctatacagccaatacgcacagaagattgcgatt
ggcgagaagatcaagaacgttcgcaaagagattgcgaatgcgttatccgtcatccaactg
gacgagctgaagagcaggaaacgtgtgttgcgacgacttggcttcatcgacgaggccgat
gtggtgcagctaaaggccagggttgcttgcgaaatcagcacaggtgacgagcttgttctg
agcgagctacttttcaaccgtttcttcaatgaactgacacctgagcagtgcgcggcctgt
ctcagctgtttcatcttcgaagaaaagacgcaggaggtgccggcgctcaaagaagagctc
gccaagccttaccgcgagatccagcagcaagccagggttatcgcgaaaatgtcacaggag
agcaagctcgcggtcaacgaggaagagtacctcaagacattcaagtacgagctgatggaa
gtcgtctacgcatggtccaagggggctacctttgctcaaatctgcaaaatgacggacgta
tacgagggcagtcttattcgcctctttagacgactagaggagcttcttcggcaaatcgca
caagcggccaaagtcatgggcagcgaagagctcgagcagaagttcacggcgtcactcgag
cttgtgcgcagggatctagtggccgcgcagtccctgtatctctaa
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