Pyrenophora tritici-repentis: 6342753
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Entry
6342753 CDS
T10215
Symbol
PtrM4_114250
Name
(RefSeq) SbcC, ATPase involved in DNA repair
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03440
Homologous recombination
ptrr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
6342753 (PtrM4_114250)
03450 Non-homologous end-joining
6342753 (PtrM4_114250)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptrr03032
]
6342753 (PtrM4_114250)
03400 DNA repair and recombination proteins [BR:
ptrr03400
]
6342753 (PtrM4_114250)
DNA replication proteins [BR:
ptrr03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
6342753 (PtrM4_114250)
DNA repair and recombination proteins [BR:
ptrr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
6342753 (PtrM4_114250)
BRCA1-C complex
6342753 (PtrM4_114250)
NHEJ (non-homologous end-joining)
MRX complex
6342753 (PtrM4_114250)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
SbcC_Walker_B
AAA_13
AAA_21
AAA_15
AAA_29
AAA_22
Spike_torovirin
Motif
Other DBs
NCBI-GeneID:
6342753
NCBI-ProteinID:
XP_001934845
UniProt:
B2W4G2
LinkDB
All DBs
Position
6:complement(475415..479335)
Genome browser
AA seq
1306 aa
AA seq
DB search
MSKIDRMMIQGVRSFGPEKGETIQFTAPLTLIVGWNGSGKTTIIESLKYATTGDLPTQSK
TGGAFIHDPKLRNEKELLAQVKLSFRSTSGVRMVVTRNLQVTVKKNTKSQKTLEGSLLMV
KDGEKHSISTRVAELDQIIPQYLGVSKAILDNVIFCHQEDSLWPLSDASTLKKKFDEIFE
AMKYTKAIENIKGIRKDRNIELGQLNIIEANAKEDKTRAKKSEDRQAKLFDEIEKLRDMY
TDLDAKCTEAQQKASDSYNHAARFEQIVAQLEAKRMTLNINKQNVAELQDSMKELGESDE
ELQSMLDQYEERVATYATQVAELKEEYHEFKQHLEQNRGALGAKQSEIGKYEAQKEQHER
QMQQRENTIKEAAKRHAIRGFDYDITEKQVPEFQQILSKMSRDQNRALERAREETQRDLR
DAQGVLNKLNTRKSGLSQSKEAARSQIMTNDKRISELQRTMNQIKADEGSEAILQERKQD
VEKQLQDATAASASERYEERISEAARNLQTLEDRKERLTAEFGDASKQARESASIDVKRE
ELGRQQHSLATMKKVHGKRLSQLVDSEWDPATLEATFQQVLSEKAGKVKEAASRRDIAQT
KLDKVNFQLSSSESQAKQKRKELQKYETKVKEAIQKDDVSDFDETLQQLEEEYEASSSDK
AKFDAQIDYMTKCLESAEKHNICRLCTRSLHDDEDEDFTTAGFIKKLKDIIAKAKNTMQA
DNADEIFAELEAARNAKPSYELATRLRQNELPDIQKTITNLASERDTLNKQLEEQDAVIH
DLEAEKQEVEALSKEVQSIVGYYTRVQELEVEIKELAQKQKSAGLSRGIDAIQSDLQQVS
DDGRSARNTLDQLVAARDKARNLITSLELSVRDINAELHNAQSKLKEKRALAERIEEFKR
ENNNQREAMRSLDQDMDNINPEIEQAQYKYDDINRRGNDRVHRTHDEASKLSESLRQLEK
ANEEINAYISRGGPQQLERTHRDIENLQGEIVRIETDMVNLTRKIKKLEDTMRDTDMSRR
TITENLRYRKAKRSLETLQIEIEKLEGEGAERDKEHYEREAEHWDLKYRQLNIDKTGVER
DMKNKDDQLTELMEEYSNLYKDSAQQYREAHIRVETTKAAIEDLGRYAGALDKAIMKYHT
LKMEEINRILAELWRNAYQGTDVDTIRIASDGDGKGNRVYNYRVVMIKQDTEMDMRGRCS
AGQKVLASIVIRLALAECFGTNCGLIALDEPTTNLDQQNIKGLAESLSQIIQTRRKQANF
QLLVITHDEQFLREMNCADYTDSYWRVGRDVKQESYIERQNIAEVT
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaattgaccgtatgatgatccagggtgtccgttcctttggccccgagaaaggc
gagacaatccagtttactgcaccgctcactctcattgtcggctggaacggctccggaaag
acgaccattattgaatcgctcaaatatgcaaccactggcgacctgcccacgcaaagcaaa
accggtggtgccttcatccacgaccccaaactgcgcaacgaaaaagagctacttgcccag
gtcaagctctcgttccgctctacttccggtgtgcgcatggtcgtcactcgcaacctccaa
gtcaccgtcaagaagaacactaagagccagaagacactagaaggttcgctgcttatggtc
aaagacggcgagaagcactccatctccactcgcgttgccgaactggatcagatcatccct
cagtatcttggtgtatccaaagctatcctagacaatgtcatcttttgccaccaggaagat
agtttgtggcctttgagcgatgcaagcactctcaaaaagaagtttgatgagatcttcgag
gctatgaagtacacaaaagccatcgagaacatcaaaggcatcagaaaagaccggaacatc
gaactaggacagctgaatatcatcgaggccaatgccaaagaggacaagacccgagcaaag
aagagtgaggaccgacaggccaagttatttgacgagatagagaagctccgagacatgtac
accgacctggacgcaaagtgtaccgaggctcagcaaaaggctagcgactcttacaatcat
gctgcacggttcgaacagatcgttgcgcagctagaagccaagcgcatgaccctcaacatc
aacaaacagaacgtggccgaactccaagatagtatgaaagagttgggcgagtctgatgag
gagcttcagagtatgctggaccagtatgaagagcgcgttgctacctatgccacacaggtt
gcggagctgaaagaggaatatcatgaattcaaacagcatttggagcagaatcgcggtgct
ctaggggcaaaacaaagtgagattggaaaatacgaggcgcagaaggagcagcatgagcgt
caaatgcaacagcgtgagaacaccatcaaggaagccgctaagcggcacgctattcgaggt
ttcgactatgacatcacagagaaacaggtacccgagtttcagcagatactgagcaagatg
tcgcgtgatcaaaacagagccctcgaacgagctcgagaagagacgcaacgggacctgcgt
gatgctcagggggttctcaacaagctcaacacgcgcaagtcgggactcagccagagcaag
gaggctgcgcgcagtcaaattatgactaacgacaagcgcatctccgaacttcagaggacc
atgaaccaaatcaaggcggacgaaggcagcgaagccatccttcaggaaaggaaacaggat
gtagagaagcaactgcaggatgcaacagctgcgtccgcttccgaacgctacgaagaacgt
atatcggaagctgccagaaacttacagacacttgaagaccgaaaagagcgcctgacggct
gagttcggcgacgcatcaaagcaagcacgtgaatctgcctccattgatgtcaagcgagag
gagttagggaggcagcagcacagcttggcaaccatgaagaaggtccacggcaagcgtctt
tcccagcttgttgattctgaatgggaccccgctaccttggaggcgacctttcagcaggtg
ctctcagagaaggccggcaaagtcaaggaagctgcttctcgccgcgacattgcacagacg
aagctggacaaggtcaacttccaactgtcaagttcagagtcacaagcaaaacagaagcgc
aaagaactgcaaaagtacgagaccaaggtaaaagaggctatccaaaaagacgatgtttcg
gatttcgatgaaaccctgcaacaacttgaggaggaatatgaagcaagttcctcggacaag
gcaaagtttgatgcacagattgactacatgaccaagtgtttggaatccgccgagaagcat
aacatctgccggctttgcacaaggagtcttcacgatgacgaagatgaagactttacgacg
gcgggcttcattaaaaagttgaaagacatcatcgcgaaggcgaaaaacaccatgcaagcc
gacaatgccgacgagattttcgccgagctggaggccgctcgaaatgctaaacctagctac
gagttggcgactcgtctacgacaaaacgaactccctgacatccagaagaccatcaccaac
ctggcatcggaacgcgataccctcaacaagcagctcgaagaacaggatgccgttatccat
gacctggaggccgagaagcaagaagtcgaagctttgtcaaaagaagtgcagagtattgtt
ggctactacactcgggttcaggagcttgaagttgagatcaaggaacttgcacaaaagcaa
aagtccgctggactatcacggggtattgatgcaatccagtccgacctgcagcaggtctcc
gacgacggccgcagtgccaggaatacgctagaccaacttgtcgctgcccgagacaaggca
cgcaacctcatcacgtccctggagttgagtgtgcgtgacattaatgcagagctgcacaac
gcacaatccaagttgaaagagaagagagcccttgctgagcggattgaagaattcaagagg
gagaataacaaccagcgagaagcaatgcgcagcttggatcaagatatggacaacatcaac
cctgagattgagcaggcacagtacaagtacgacgatatcaaccgccggggcaatgaccgc
gtccatcgcacccatgatgaagcttccaagctctccgaaagtctccgccagcttgaaaag
gcgaacgaagagattaatgcttacattagtcgtggcggcccacagcagctcgagcgcacg
catcgtgatattgagaatctacaaggcgaaattgtacgcatcgagacagacatggtaaat
ctgacgaggaagattaagaagctcgaggacactatgcgcgacaccgacatgagcaggcgt
acgataactgaaaatctacgctaccgaaaagcgaaacgctccctcgagactttgcagatt
gaaattgaaaagcttgagggagaaggggctgagcgcgacaaggaacactacgagcgagag
gccgagcactgggacctcaagtaccgccagctcaacattgacaagacaggtgtcgaacgc
gacatgaagaacaaggacgaccagcttaccgagcttatggaagagtacagtaacctctac
aaagactctgcgcaacaataccgcgaggcacatatcagggtggaaaccaccaaagccgcc
attgaggatctgggacgctatgctggtgcacttgacaaggccatcatgaagtatcatacg
ctcaagatggaagagatcaaccgcatcctcgccgagctctggcgcaatgcgtaccaaggt
accgacgtagacacgatccgcattgcatccgacggtgacggcaagggaaaccgggtctac
aattaccgcgtcgtcatgataaaacaagacacagagatggacatgcgaggccgatgctcc
gctggtcaaaaggtcctggcttccatcgtcattcgattagctctcgcagagtgtttcggc
acaaactgcggtcttatcgcgctcgacgagccaacgacgaatctggatcaacagaacatc
aagggtcttgcggagtccctgtctcagatcatccagacgcgcaggaagcaggccaacttt
cagcttctggtcattactcacgacgagcagtttctgcgtgagatgaactgcgctgattat
accgattcttactggcgtgttggccgggacgtgaagcaggagagttatattgagcgtcag
aacattgcggaggtgacgtaa
DBGET
integrated database retrieval system
