Pyrenophora tritici-repentis: 6342772
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Entry
6342772 CDS
T10215
Symbol
PtrM4_114440
Name
(RefSeq) putative nucleoporin nsp1 protein
KO
K14306
nuclear pore complex protein Nup62
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
6342772 (PtrM4_114440)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6342772 (PtrM4_114440)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
6342772 (PtrM4_114440)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
NET2A
hDGE_amylase
DUF5798
Nucleoporin_FG
BRE1
ATG17_like
WXG100
Motif
Other DBs
NCBI-GeneID:
6342772
NCBI-ProteinID:
XP_001934864
UniProt:
B2W4I1
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All DBs
Position
6:531563..533562
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AA seq
631 aa
AA seq
DB search
MSFSFGNTNNNNSGGSAPNKNLFGAPASSSGGPTTLFGTTTNNTTSAPSSGGLFSSAGGG
TSNLFGAGVSSTPASKPGGLFGGGQATSGASSTPGMGFGGGFKKEGDASKPANTGLFSGA
GASTGGAATSSGPSFGFGTSAATPAVNKTSLLPSTTPAGPPPGGLFGQNNQAGSTSSLFN
TKPTTTTSSGPGLFGGATSGQTAAKPAFSLGGNQATSAAQDTSKPAGSLFSGIGSTTPSS
TPAKPSPFSLGATTTGQQASSQATSSAQPAMSLGGTSAPPASSAGGASSGFSFGTTAAST
AATTGATTTATSGAPTTTAPPALPAFPAPGGASSAPATSGATTSASTAPNVSSRPTGTEA
PASSSNTTTQPASTSGATSGTSGNNAAQAGLAASTAGPAPSAQSRLKNKSMDEIITRWAA
DLSKYQKEFQAQAETVASWDRALVENSDKVRQLYSKTFQAERDAAEVERQLTIVEDNQNE
LDSYLDRYEKEIDNLMKMHGVNSKNETLRGPDQERERTYKLAEKLQDRLNELNKDLTEMI
EEINNTSQTLSKTGKPDDPLTKVVRVLNTQLAQLQLIDSGASQLQQKIKEAQSETRSVGA
NGWNGLGSDPSADFMKSVRGGRASQRFGGVS
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgagcttctcattcggcaacaccaacaacaacaatagcggaggtagcgcgcctaataag
aatctttttggcgcacctgcctcaagtagcggtggaccgacgacgcttttcggcaccacg
acgaacaacacgaccagcgcacccagcagcggcggtctcttcagcagcgcgggtggaggc
acttctaatttgttcggcgccggcgtatcgagcacacctgcgagcaagccgggcggtcta
tttggcggaggccaagctacgtcgggcgcgtcgtcaacacctggtatgggatttggagga
ggattcaagaaagagggagatgcgtccaagccagcaaacacaggactgttcagtggagcg
ggtgcttctactggcggagcggcgacgtcttcgggaccctcgtttgggttcggtacatcc
gctgccacgcccgcagtaaacaagacgtcattactaccatccacgactccagccgggcca
cctcccggtggtctgttcggtcagaataatcaggccggaagtacatcctctttgttcaac
acgaagccaaccacaacaacttcctctggccctggtctttttggtggcgctacctctgga
caaactgctgcgaagcctgccttctctctaggcgggaaccaagcaacatccgctgcacag
gacacctctaaacccgcaggtagtctcttcagcggcatcggtagcacaactccctcttcc
acaccagcaaaaccttccccattcagcctcggcgctacaactacgggacagcaggcttcc
tcgcaggctacctcgagcgcgcaaccggctatgtctttgggtggaacctctgctcctcca
gcgtcctctgcaggaggagccagcagcgggttcagctttggcactactgctgctagcaca
gcggcgactactggagctaccaccacagcaacaagcggtgcgcccaccacaaccgcacct
cctgcccttccagcgttcccagccccgggtggtgcaagctcagcacctgccacctctgga
gctacaacctccgcaagcaccgctccaaatgtgtccagcaggcccaccggaaccgaagct
cctgcttcatcatcaaacacaaccacacagccagcatctacttctggagccactagcggt
acctcgggaaacaatgctgctcaagctggattagctgcctcgacagctgggccagcacca
tcagctcagtcacgactaaagaacaagtccatggacgaaatcattacccgctgggcagcc
gacttgtcaaagtaccagaaggaattccaagcacaagctgagacagtcgcttcgtgggac
cgagctttggtggaaaactcagacaaggttcgacagctgtactcaaagacctttcaggca
gagcgagatgctgcggaggtcgagagacaattgacgattgtggaggataatcagaacgag
cttgactcgtacctggaccgatatgagaaggaaattgacaacctcatgaagatgcacggt
gtcaacagtaagaacgaaactttgcgtggacccgatcaggagcgtgagaggacctacaag
cttgccgagaagcttcaagaccgcctcaacgagcttaacaaggacctcacggagatgatt
gaagaaatcaacaacacttcgcaaaccctcagcaagaccgggaagccagatgatccccta
accaaggtcgtccgcgttctcaacacacagctcgctcagctccagcttattgactctggc
gcttctcagcttcagcagaagatcaaagaggcacagagcgagacacgcagcgttggcgct
aacggctggaacggacttggttcggacccttcggccgactttatgaagagcgttcggggc
ggtcgtgcctcgcagcggttcggcggagtatcgtag
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