Pyrenophora tritici-repentis: 6342861
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Entry
6342861 CDS
T10215
Symbol
PtrM4_115310
Name
(RefSeq) RpoC, DNA-directed RNA polymerase, beta' subunit- subunit
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03020
RNA polymerase
ptrr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
6342861 (PtrM4_115310)
09124 Replication and repair
03420 Nucleotide excision repair
6342861 (PtrM4_115310)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptrr03021
]
6342861 (PtrM4_115310)
03400 DNA repair and recombination proteins [BR:
ptrr03400
]
6342861 (PtrM4_115310)
Enzymes [BR:
ptrr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
6342861 (PtrM4_115310)
Transcription machinery [BR:
ptrr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
6342861 (PtrM4_115310)
DNA repair and recombination proteins [BR:
ptrr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
6342861 (PtrM4_115310)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
6342861
NCBI-ProteinID:
XP_001934953
UniProt:
B2W4S0
LinkDB
All DBs
Position
6:776779..782141
Genome browser
AA seq
1742 aa
AA seq
DB search
MAPGVPAVSKCPLRTIKEIQFGLLSPEEIKAMSVVHIIYPETMDEQKQKPREQGLNDPKL
GTIDRMYHCSTCKEDIQVCPGHFGHIELHTPVFHVGFVVKIKKLLETVCHTCGLIKADFN
HPDWIAATKTKDAKKRFDKIWRMSRTKSTCDADGPDSGKDKIPKIPHGGCGSAQPDTIRK
DGLKLTATWKQKKKEDDDGSGDRKEVITPKQAQTIFKLMTENTLALLGLNADYARPEWMI
LDVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDIIRANGRVAECQQEGSPQHVTAEF
EALVQYHVATYMDNDANGVPQAMQKSGRPLKTIRGRLKGKEGRLRGNLMGKRVDFSARTV
ITGDPNLSLDQVGVPRSIARTLTYPEVVTKFNISKLTNLVRNGPNQHPGANYVIKADGAR
LDLKHNKNLDDLRLQYGWKVERHINDDDVIIFNRQPSLHKESMMGHRVKVMPYSTFRLNL
SVTSPYNADFDGDEMNLHVPQSDETRAEVQNLCMVPKQIVSPQKNQPLMGIVQDTLLGVY
KMSRRDNFIGIEQVMPILMWVPDWDGIVPEPAILKPRPLWTGKQLVSMAFPKEVNIEKKE
DDSSPSPQNDIRDKSLMIKSGQLIYGQVTKKIVGASAGGVIHIIFNELGPDAAVKFFNAC
QRICNWWLLHHGFSFGVGDTIPDPATSEKIADEVRKSREKVEQIIEQATLDELEPMPGMT
IRGTFESKVQKFLNEAREGGGTAAQTSLKDFNNVVQTVVSGSKGSTVNISQMVALVGQQA
VEGQRIPYGFKYRTLPHFAKDDYSPESRGFVENSYLRGLTPSEFFFHAMAGREGLIDTAV
KTAETGYIQRRLVKALEDVMVKYDGTVRNSMGDIVEFIYGEDGLDGAYIEKQSMDTIMCS
DADFEAAYKLDVLTTDQPEIPVWKLEGSPMFQGDVDVQRALDEEFEQIKNDRAVLRDTLN
EEELDSFQLPLNIQRMIRSAQARFGINPEKAVSNLTPIEAIQQVRETLDRLIVIRGTDEL
SIEAQNSATQLFKAHLRARLAFKKLAVQHRLNKEALKYILGELEDRFLKAAVAPGEMVGV
LAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAANIKTPSMLVRQINKKAD
QGDAKKLRSTIELTTLRSLTQAVELYYDPDIQSTRVEDDQDMVESYFILPEEDEVIESQS
KWLLRIILDRKKLLDKSITIGEVAGKIKEEFKPNLAVIFSDENADEQVMRVRFIWDQNLT
KDDEDEDERDERWMRKLEQHLLDDVTLRGVPGVERAFIREHCVTKKRDDGSLLHSKSSPE
CKEWVLDTTGTALAEVLSIPGVDATTTYSNSFIEILAVLGIEAARAGLLKELGMVLSFDG
SYVNHRHMALLVDIMCQRGVLMAITRHGINRNDTGALMRCSFEETVEILLEAAGFGELDD
CRGVSENIMLGQLAPMGTGEFDVVMDNGMLLTMVEDNSKMMGGAAGAGTYLSDGAATPYD
LGSPTYEGGMGMGGGYDQVSFSPMAAAGGGDDQGGFTAYGGSYGSGGFSPYDGGRSPGGS
GFTGMSPGFTSPVSPGFSPTSPGYSPTSPGTASPRFAATSPGYMASPTSPHYSPTSPRYG
SPTSPSYSPTSPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPAYSPTSPQYSPTSPQYS
PTSPQYQATSDRRSPTSPTSPQYSPTSPRYSPTSPAGSFSPTSPRYSPTSPGPAYSPTSP
KQ
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atggctcccggcgtgccagcagtctcgaaatgtccgctccggaccatcaaagagatccag
ttcggtctgctctcgcccgaggagatcaaggccatgagcgttgtccatatcatctaccct
gagaccatggacgagcagaaacagaagccgcgtgagcagggccttaacgaccctaagctc
ggtaccatcgaccgcatgtaccactgctcgacgtgcaaagaagacattcaggtctgcccc
ggccactttggccacatcgagctacacacgcccgtcttccacgttggattcgtcgtcaag
atcaagaagctcctcgagactgtgtgccacacctgtggcctgatcaaggctgactttaac
caccccgattggattgccgctaccaagacaaaggacgcaaagaagcgtttcgacaaaatt
tggcgcatgtcgcggacaaagagcacgtgcgacgctgacggccccgacagtggcaaggac
aagatccccaagatacctcacggtggttgcggcagtgcacagcctgacaccattcgcaaa
gatggtctcaagctcaccgccacctggaagcagaagaagaaggaagatgatgatggctca
ggcgaccgcaaagaagtcatcacccccaagcaagctcagaccatcttcaagcttatgacg
gaaaacacgctagcactgcttggcctgaacgctgactatgcgcgccccgagtggatgatc
ctcgatgtcttgcccgtacctccgccgccagtgcgtcctagtatctccgtcgacggtact
ggtcagggtatgcgtggagaggacgatttgacgtataagctgggtgacatcatccgcgca
aacggtcgcgtcgccgaatgccagcaagagggttcacctcagcacgtcactgccgagttc
gaagctcttgtccagtaccatgttgcgacatacatggataacgatgccaacggtgtccca
caggccatgcaaaagtctggtcgtcctctaaagaccatccgtggtcgattaaagggcaag
gagggccgtctccgtggtaacttgatgggcaagcgtgtcgacttctccgcacgtactgtc
atcactggtgaccctaacctgtcactggaccaagtcggtgttccccgatccattgcccga
actctcacataccccgaagtcgtcacaaagttcaacatcagcaaactcacaaacttggta
cgcaacggtccaaatcagcatcctggtgccaactacgtcatcaaggccgacggcgcccgt
ctcgacctcaagcacaacaagaacctggacgatctgcggctgcaatatggctggaaagtt
gagcgccacatcaacgacgacgatgtcattatcttcaaccgtcagccctcccttcacaag
gagtctatgatgggtcatcgcgtcaaggtcatgccctactccaccttccgtctcaatctc
tcggtcacatctccgtacaacgccgatttcgatggtgacgagatgaacctccacgttcct
cagagcgacgagacccgtgctgaggtccagaacttgtgcatggtcccgaagcaaattgta
tcaccccagaagaatcagcccttgatgggtatcgtgcaggacacgcttctcggtgtctac
aagatgagccgtcgtgacaacttcatcggtatcgaacaagtcatgcccattctcatgtgg
gtgcctgattgggatggcattgttccagagcctgccattctcaagcctcggcctctctgg
accggaaagcagctcgtgagcatggctttccccaaagaggtcaacattgagaagaaggag
gatgattcttcaccttcgccgcagaatgatatccgggacaagagtctaatgatcaagagt
ggtcagctgatctatgggcaagtcactaagaagattgttggtgcttcggcaggtggtgtt
attcacatcatcttcaacgaacttggccctgacgcggctgtcaaattcttcaacgcttgc
cagcgtatttgcaactggtggctgctccaccacggcttcagtttcggtgtgggtgatacc
attccggatcctgcgacttcagagaagattgccgatgaagtccggaagtccagagaaaag
gtggaacagatcatcgagcaagcaactttggatgagctcgagcctatgcccggtatgaca
attcgtggtacatttgagtccaaggtccagaagttcctcaacgaagctcgtgaaggtgga
ggtactgcggctcagacaagtttgaaggacttcaacaacgttgtccagactgtcgtttct
ggttccaagggttccactgttaatatctcccagatggtggcccttgtcggtcaacaggct
gtggaagggcagcgtattccatacggcttcaagtacaggacattgccacatttcgccaaa
gacgactattcgcccgaatctcgtggtttcgtcgagaactcctatctccgtggtctcaca
ccctccgaattctttttccacgctatggctggtcgtgagggtttgatcgataccgctgtc
aagacagccgagactggatatatccaacgtcgtttggtcaaggccctcgaagacgttatg
gtcaagtacgatggcactgttcgtaactccatgggagacattgttgagttcatctacggt
gaagatggtcttgacggtgcctatatcgaaaaacagtccatggatactatcatgtgctcc
gatgctgacttcgaggctgcgtacaagctggatgtgttaactactgatcagcccgagatt
cctgtctggaagcttgagggctctcccatgttccaaggtgacgtggacgtacagcgagct
ctcgacgaagagtttgagcagattaagaacgatcgtgctgttcttcgcgacacattgaac
gaggaagagcttgatagcttccaattgcctctcaacatccagcggatgatccgatctgct
caggctagattcggcattaacccggaaaaggctgtcagcaacctcactcctattgaggcg
attcagcaggtccgcgaaacactcgaccggttgattgtcattcgtggtaccgatgaactg
tcgatagaagcgcaaaacagcgcgactcaactcttcaaagcccatcttcgagctcgtctc
gctttcaagaagcttgctgttcagcaccgcctaaacaaggaggccctgaaatacatcctg
ggagagctcgaagaccgtttcctcaaggccgctgttgcgcctggtgagatggtcggtgtc
cttgctgcacagtcgatcggtgagcctgccacgcaaatgacactcaacactttccatttt
gctggtgtgtcttccaagaacgtcactctcggtgtaccgcgtctcaaggaaattctcaac
gtcgccgccaacatcaagacaccatctatgcttgtccgtcaaatcaacaagaaggccgac
caaggagatgccaagaagttgcgcagtacgattgagcttacaactctgcgctcgttgaca
caggctgtcgagctttactacgatcctgatattcagtcaactagagtggaagatgaccaa
gacatggttgagtcctacttcattctacccgaagaggacgaagtcatcgaatcgcagtct
aaatggctgcttcgtatcatcctcgaccgcaagaagttgctggacaagagtatcactatc
ggcgaagttgctggaaagatcaaggaggagttcaagcccaacctcgctgttatctttagt
gatgagaacgcagatgagcaggttatgcgcgtgcgtttcatttgggatcaaaacctcacg
aaagacgacgaggatgaggacgagcgagacgaacgatggatgcgcaaacttgagcagcat
cttctcgacgatgtcactctacgtggtgtacccggtgttgagcgtgcctttatccgtgaa
cactgcgtcaccaagaagagggatgacgggtcgcttttgcactccaagagcagccctgag
tgcaaagagtgggtgctcgacaccaccggtaccgccttggccgaagtactgtcaattcca
ggtgtggatgctaccaccacgtactctaactcgttcatcgaaatccttgctgtgcttggt
attgaggcagctcgagctggtcttcttaaggaattgggcatggtcttgtcctttgacggt
tcatatgtcaaccatcgtcacatggcattgctcgtcgacattatgtgccagcgtggtgtc
ctcatggccatcactcgtcacggcatcaaccgtaacgacactggagcactcatgcgttgt
tcgttcgaagagactgtcgagattcttctcgaagctgctggctttggtgaactcgatgac
tgccgcggtgtgtctgagaacatcatgctgggtcaactcgcgcccatgggtactggagaa
ttcgatgttgtcatggacaatggcatgcttctcaccatggtcgaggataactccaagatg
atgggaggtgccgctggtgcaggaacctatctgagtgacggtgcggccacgccttacgac
ttaggctctcctacgtatgaaggaggaatgggtatgggcgggggatacgaccaagtgtcc
ttctcgcctatggctgctgcaggtggcggtgacgatcaaggtggctttactgcgtatgga
ggtagttatggtagcggtggcttcagcccctatgatggagggcgaagcccaggtggctca
ggctttaccggcatgtctccaggatttaccagccctgtctcgccaggcttctctcccact
tcgcctggttactcgcctacttcaccaggaaccgccagcccgcgcttcgctgcaacgtcg
ccgggttacatggcgtcgcctacgtccccacactactctccaacttcgccgcgatacggt
tcgcctacatcaccgtcgtactcgcccacgtctccggctggttactcgcccacgtcgcct
caatactctcctacatcacccaactacagtccgacgtcgccaacgttcatgggaggagcg
acatccccagcgtacagccctacatcgccgcagtacagtccgacatcacctcagtacagc
ccgaccagcccacagtaccaagccaccagcgatcgtcgtagcccgacatcgccaacgtct
ccccagtacagcccgacctcgccccgctactcgccaacgagcccggcaggatccttctct
ccgacgtcaccccggtacagcccgacatctccagggcctgcatattccccaacatctccg
aagcaatag
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integrated database retrieval system
