Pyrenophora tritici-repentis: 6343252
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Entry
6343252 CDS
T10215
Symbol
PtrM4_120120
Name
(RefSeq) nonsense-mediated mRNA decay factor (Upf2)
KO
K14327
regulator of nonsense transcripts 2
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03013
Nucleocytoplasmic transport
ptrr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
6343252 (PtrM4_120120)
03015 mRNA surveillance pathway
6343252 (PtrM4_120120)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6343252 (PtrM4_120120)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
6343252 (PtrM4_120120)
mRNA cycle factors
P-body specific factors
6343252 (PtrM4_120120)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
6343252
NCBI-ProteinID:
XP_001935341
UniProt:
A0A2W1EVT0
B2W3F8
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All DBs
Position
6:complement(<2062322..>2065966)
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AA seq
1180 aa
AA seq
DB search
MERQRKRTLRALNIRAWDGDQDVFAVQGSLDSSMKKNTAFIKRLRTAVNASAQAQFLQEI
RTLSLHKYLSEIISACYEGLCKLKTPGEIAAGVEIVSALHQRFGPADFTGYIGWYIGRGL
ATPDKSHLKTLPQDVREREEKDRLARQRVLLRVATELWLVGVLRSLDDVARPEEASKTKD
NGKLIEGSAKAKSRAENADAEPFPLEVLKDMLGHDREHINLPLVVIFVKAFSWDILGTKP
ASAEGRKTVNDDGSTVAEKNGESSSAEDEEEASRDPPIISPDLQQRFKNILNRYFEDVKT
HLLRDQKHILSQGRKNAEAYVKSGEVFEDRQSNYEKQMKSQERLVSNAQVLADALGAEMP
DLKEKDSSANTGDGSIGLIKTGEYLRGQSDGAGIWEDEEERRFYENLIDLKDRVPGILLE
EVKKKKTDSDEQVGKKMEAKPDTVDKEVAETTADNKAAEGEDQSTAIANKSVGAQVDALL
ARLPELATKDAVDQTAMDFCFLNSKASRNRLIKAIQEIPKGRSDLLPLYSRLIATLGKYM
SDVSQGLVSYLDEEFRSLQRRKSKDFLGQVRTQNVRYLAELTKFGVVPEHVIFHCLKVSL
DDFSRMNIEIICNLLENCGRYLLRNPETSPRMASFLETLQRKKSAQVIGQQERMLIENAV
YYVNPPERAAIEQKERTPTEQFLRKIMYQDLTRRSLDKTIKQVRKMHWEEEDVVNLLHKV
FAKPGKIKYSNIHLLAVMLGTIHRFHQDFAISVIDDLLESITFGLELNDFKFNQRRISEV
KYLGELYIYRLVDSPLIFDTMYKLLNYGWEGGYAKPGSYNPLDLPDDYFRIRLVCNLLET
CGMYYDKGATKKKLDFFLTYLQYYVCTKEALPMDVEFLVQDAYSLVRPQWKIITNPEDAM
HAFGEAVKQNYQTAAADKPVEPDEDDVSASDDELDGPEDEDIVIPDGEGDKSSGDEDEDS
DDDEPTKQGSSDEEEERIVVTRPEDERDPEADAEFDRELAKLMSESAESRKHDRKPVFDV
PLPMRRARETTVNAEDSGNEAPAPIAPAPSHTMKFSLLSKRGNRTQTRSIDLPSDSTFAV
AMRNKQQADTEERQRIKSLVLNYNEARDDADDTTGDSPFHYTLQPNTNRKHTETSKGLDK
TPNPYAQPRLDKAGANRSNQRARKLQLSDVNWYDSRFSVL
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atggagaggcaaaggaagcgaacgcttcgcgcacttaatattcgcgcctgggatggcgac
caagatgtcttcgccgtgcaaggctccctcgactcgtccatgaaaaagaacactgccttc
atcaagcgcctacgaaccgccgtaaacgcgtccgcccaagcccaattcctccaagaaatc
cgtaccctgtccctccacaaatacctctccgaaatcatctccgcctgctacgaaggcctg
tgtaaactcaagacacccggcgaaattgctgctggcgtggaaattgtcagcgccctccac
cagcgctttggccccgcagacttcaccggctacattggctggtacattgggcggggactg
gcgacaccggacaaatcacacctgaagacgctcccacaggatgtgcgcgagcgagaagag
aaggaccgtctggctcgtcagcgcgtacttttacgtgtcgccactgaactctggcttgtc
ggtgttctgcgcagtttggatgacgtagcccggcctgaagaggcaagcaagaccaaagac
aatggcaaactcatcgaaggctctgcaaaggcaaagtcacgggcagagaatgccgacgcc
gagccttttcctctcgaagtgctcaaggacatgcttggacacgaccgtgagcatattaac
ctgccgctggtcgtcatcttcgtcaaggccttttcctgggacatactgggcaccaagccg
gcgtctgcagaaggccgtaagacagtaaacgacgacggcagtaccgtggcagagaagaat
ggagagtcgtcgagcgcggaagacgaggaagaagccagcagagatccgcccatcatctcg
ccagatttgcaacagcgattcaagaacatcctcaatcgttatttcgaagacgtcaagacc
cacctcctccgcgatcagaaacacatactcagccaagggcgcaagaatgccgaagcatac
gtgaaatccggggaggtcttcgaagaccgtcagtccaactacgagaagcagatgaagtct
caggagcgactggtgtcgaatgcccaagtcttggccgatgcactgggtgctgagatgcca
gacttgaaagagaaggatagctctgcaaacacgggggacggttctataggcctgatcaag
acgggcgaatacttacgcggccaaagtgacggtgcgggcatctgggaagatgaggaggag
cgccgcttctacgagaatctgattgacctgaaggaccgtgttccgggtatcctgttagag
gaggtaaagaagaagaagaccgacagcgatgaacaggttggcaagaagatggaagcaaag
cccgacactgttgacaaggaagtagccgagactactgcggataacaaggcagccgagggc
gaagaccagtctactgccatcgccaacaagtccgtcggagctcaggtagatgcccttctg
gcgcgcctgccagaactcgcgacaaaagatgccgtcgaccaaaccgccatggacttctgc
tttttgaactcaaaggcctctcgaaaccgtctcataaaagctatacaggagatccccaaa
ggccgctccgacttgctacctctatattcgaggctcattgcaacgctcgggaaatacatg
tctgacgtttcgcaaggcttggtttcttaccttgatgaggagttccgaagtttgcagcga
cgaaagtcaaaggactttctgggacaagtacgaacgcagaatgtgcgttatcttgcggaa
ttgacaaagttcggcgttgttcctgagcacgtcatcttccattgcctcaaagtcagcttg
gacgacttttcgcgaatgaatatcgagatcatctgcaatctgctggaaaactgtgggcga
tacctgcttcgcaacccagagacatcgccccgtatggcttcctttctagagactctccaa
cgcaaaaagagtgcccaggttattggtcaacaggagcgtatgctgatcgagaacgccgtc
tactatgtcaaccccccagagcgcgctgcgattgagcagaaggagcgaacgccgaccgag
cagttcctgcgcaagatcatgtaccaggatttgacccgtcgctcactggacaagaccatc
aagcaagttcgcaagatgcactgggaagaggaagacgtggtcaatcttctgcacaaggtc
tttgcaaagccagggaagatcaagtacagtaacatccatttgctggccgtgatgctgggg
accatccatcgattccatcaagactttgccatctcagtcattgatgatctcctagaatcc
atcacgttcgggctggagttgaatgacttcaagttcaatcagcgacgaatctctgaagtc
aagtacctcggcgaactgtacatctatcggctggtagactctcccctcatcttcgacacc
atgtacaagctgttgaactatggatgggagggcggatatgctaaacctggatcgtacaat
ccgttggatcttccagatgactacttccggatacgcctggtttgtaaccttcttgaaaca
tgcggcatgtactacgacaagggtgcgactaagaagaagcttgacttcttcttgacctat
ttgcagtactacgtttgcaccaaggaggccctccccatggatgttgagttcctcgtgcag
gacgcgtacagccttgtccgaccgcagtggaaaatcatcacgaacccagaggatgctatg
catgcgtttggggaagctgtcaagcaaaactaccaaactgcagcagccgacaagcctgtc
gagcctgacgaagatgacgtgtccgcgtcggatgatgagctagacggcccggaagacgaa
gacattgtgattccagacggcgaaggagataagtcatctggtgacgaggatgaagattcg
gacgatgatgagcccacgaagcaaggttcatcagacgaagaagaggaacggattgttgtg
acccggccagaagacgaacgtgaccctgaagctgatgccgagttcgatcgcgaacttgcc
aagctcatgtcggagagcgccgagtctcgcaagcacgaccgaaagcctgtctttgatgta
ccgctgcccatgcgccgcgctcgagagactactgtgaatgctgaagacagtggcaacgaa
gcaccggcgccaatcgctccggcaccctctcacacgatgaagttctcgctgcttagcaag
cgtggtaatagaactcaaacgcggtcgatcgatttgccatcggattcgacctttgctgtc
gccatgcgcaacaagcaacaagccgacacggaagaaaggcagcgcatcaagagcctggtt
ctgaactacaacgaagcccgagatgacgctgacgatacgactggtgattcaccttttcat
tacacccttcaacctaacaccaatagaaagcatactgaaacgtctaaaggtctggacaag
actccgaatccatacgcacagccgcgtcttgacaaggctggtgccaatcgcagcaaccag
cgtgcacggaaactacagctgtccgatgtaaattggtatgattcccgcttttctgttttg
taa
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