Pyrenophora tritici-repentis: 6343660
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Entry
6343660 CDS
T10215
Symbol
PtrM4_110640
Name
(RefSeq) SrmB, Superfamily II DNA and RNA helicase
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03013
Nucleocytoplasmic transport
ptrr03015
mRNA surveillance pathway
ptrr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
6343660 (PtrM4_110640)
09122 Translation
03013 Nucleocytoplasmic transport
6343660 (PtrM4_110640)
03015 mRNA surveillance pathway
6343660 (PtrM4_110640)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6343660 (PtrM4_110640)
03041 Spliceosome [BR:
ptrr03041
]
6343660 (PtrM4_110640)
Enzymes [BR:
ptrr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
6343660 (PtrM4_110640)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
6343660 (PtrM4_110640)
Spliceosome [BR:
ptrr03041
]
Complex C
Other components
EJC/TREX
6343660 (PtrM4_110640)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
6343660 (PtrM4_110640)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
DUF4844
Motif
Other DBs
NCBI-GeneID:
6343660
NCBI-ProteinID:
XP_065962346
LinkDB
All DBs
Position
5:<2820083..>2821902
Genome browser
AA seq
438 aa
AA seq
DB search
MSHEEDLIDYSDEEIQPTEIPSNGAAGATKADLTAGEAAGDKKGSYVGIHSTGFRDFLLK
DELVRAITDCGFEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEA
GAATILVMCHTRELAYQIRNEYNRFAKFLPEVRVGVFYGGTPVQKDIELLSNKDSHPHII
VGTPGRINALVRDRHLRLANLKHFVLDECDKMLDQPDMRNDVQAIFRATPQHKQVMMFSA
TLNKDVRVVCKKFMQNPLEIYVDDEKKLTLHGLQQYYMKLDEKEKNRKLNDLLDSLEFNQ
VIIFVRSTLRCSELDKLLRECNFPSTAVHSGISQEERIKRYKEFKEFQTRICVSTDIFGR
GIDVERINVAINYDMPDKADAYLHRVGRAGRFGTKGLSISFVSSPDDEAVLKSIEERFQV
ELPEFPENGIESATYMDN
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaggaagacctcatcgactactccgacgaggagatccagcccaccgagata
ccttccaacggcgccgcaggtgcgaccaaggccgacctcaccgctggtgaagctgcaggc
gacaagaagggcagctatgtcggcatccactccaccggtttccgcgacttcctgctcaaa
gacgagctcgtccgagcgatcacggattgtggcttcgaacatccttccgaggtccaacaa
gttaccatcccccaggccatcctaggaaacgatgtcctctgccaggccaagtccggtctc
ggaaagacagccgtcttcgtgctcgctactctccagcagatggacgagaagccagaggcc
ggtgctgcaaccatcctagtcatgtgccacactcgcgagttggcctaccagattcgcaac
gagtacaaccgcttcgccaagttcctgcccgaggttagggtcggcgtgttctacggaggt
acacccgttcaaaaggacattgagctcctcagcaacaaggacagccacccgcacattatt
gtcggaacgcccggtcgtatcaacgctctcgtccgcgacaggcatcttcgccttgccaac
ctcaagcactttgtcctcgacgagtgtgacaagatgctcgaccagccagacatgcgcaac
gacgtccaggccatcttccgcgccactccccagcacaagcaggtcatgatgttctcagcc
acccttaacaaggatgtccgagtcgtctgcaagaagttcatgcagaacccgctcgagatc
tacgtcgacgatgagaagaaactcacactccacggtctgcagcagtactacatgaagctt
gacgagaaggagaagaaccgtaagctcaacgaccttctcgacagcctggagttcaaccaa
gtcatcatcttcgtccgttcgactctccgctgctcggagcttgacaagcttcttcgcgag
tgcaacttccctagcactgcggtccactctggtatcagccaagaagagcgaatcaagcgc
tacaaggagttcaaggagttccagacccgtatctgtgtctccactgacatcttcggtcgt
ggtatcgatgtcgagcgtatcaacgtcgccatcaactatgacatgcccgacaaggctgat
gcctaccttcaccgtgtcggtcgtgccggtcgtttcggaaccaagggacttagtatctcc
tttgtgagcagcccagatgacgaggccgttctcaagtcaattgaggagcgtttccaagtc
gagcttcccgagttccccgaaaacggcatcgaatcggccacatacatggacaactag
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