Pyrenophora tritici-repentis: 6344605
Help
Entry
6344605 CDS
T10215
Symbol
PtrM4_048200
Name
(RefSeq) RNA14, Pre 3'-end processing (cleavage and polyadenylation) factor
KO
K14408
cleavage stimulation factor subunit 3
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
6344605 (PtrM4_048200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6344605 (PtrM4_048200)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
6344605 (PtrM4_048200)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
PRP6_TPR
HAT_PRP39_C
TPR_14
TPR_CcmH_CycH
TPR_19
TPR_16
Motif
Other DBs
NCBI-GeneID:
6344605
NCBI-ProteinID:
XP_065959326
LinkDB
All DBs
Position
10:<2629574..>2632900
Genome browser
AA seq
1057 aa
AA seq
DB search
MADEAELAFLAAQQDEYDPSAGYTMNEASTGQDEYDPTTTYSPHSYQSASMQPESGANSP
PPAAEGGENGLKAVPVPAQTAADASAAPTSKRPRTVGGFVDESEDEEEESAVQPEANTTL
PSATGATESPQRSFTNTPNNNPNPHVQLHSAQDEASASISASVTVNEPAPSVASLPNGST
PVPDATKPGTPDVLTVPSARPSVAPATPAPSASASATKPRLPQDRVGILEDRIAEDPRGD
IEAWLSLIEEHRRRHKHDDARAVFERFLKLFPSAGETWVDYINFETELDELPKVEHLFGR
SIPSAQYLGIYSAYIDFIRRRFNLTTDQNGQNRQTVTQAYEFVLNSVGLDVHAGKLWLDY
IEMLKTGPGVLGGSSWQDMQKMDTLRKAYQRAVAVPHNTTLELWRDYDKFEMSLSKATGR
KQLQETSPAYMTARSAINVLENNITRGINRTTLPKLPPAAGFDGYDDYMNQVKLWKNWIQ
WEKSDPLECSTDNRELYNKRVLHLYRNALMALRFWPELWYEAAEWCFENNLQAEGDKFLV
DGIDANPESCLLAFKKANQVEQRTDFEDGQPGIIAKGKAVREPYQRLLDTIYDLTAQVKK
REEHSIARAREQFEAQKAADEAARATAQQNADADDEDEVVAARRQKEKEDAFNGQLQAMS
AGYNAQTQNLKKTLTYAWIALMRAMRRVQGKGDPKADVGGFRGIFTEARKKGKLLSEAYV
ASALIEHHCYQEPAAQKIFERGMKLFPEDEQFALEYIKHLIKLNDSTNARAVFETVVGKL
TAKPENVHRAKSLFAFFHDYESQFGELAQITKLEQRMATLFPEDPQLHRFSQRFASPTFD
PISVRHIISPRTQMRPVMPSVMPSVMPSVMPSVEEHQPMPAVPAQIMAEQQQQRYVSPGI
VNPPHLNNLPITNSPKRPLEDADEVAQPRKLARGESPLKGAAGRRLDAARRNLATTGATP
VGQAPGPPPLPRGVNFLLGIIPPAHTYKETRFKADVLVALLRDVAAIPVPPGQGPPQPQR
WGTTATTAQQLQSIHEKYGNGGQMAMHSPLAGANPWG
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaggccgagctcgccttcctcgcagcgcagcaggatgagtacgacccttca
gccggctacacgatgaatgaggcgtcgactggccaggacgaatacgaccccacaacaaca
tactcgccgcactcgtatcagtcggcttcgatgcagcctgaatctggcgccaactcgccg
cccccagccgccgagggtggtgagaatgggttgaaggccgtgcccgtgcccgctcagact
gccgcagacgcttccgcagcgccgacgtcaaagcgaccgcgcactgtgggtggttttgtc
gacgagagcgaggacgaggaagaggagtccgctgtacagccagaggcgaataccacgctg
ccaagtgcgacgggagctacagagtctcctcagcggtcttttacaaacactccaaacaat
aatcccaacccacatgtacagttacatagtgcacaagatgaggcgtctgcttctatttct
gcttctgtcactgtcaatgagcctgctccctctgttgcttctcttcctaacggcagtacg
cctgtgccagacgctactaagccaggtactcccgacgtcttgactgttccttcagcgcgc
ccgtctgtggctcccgctaccccagctccttctgcgtctgcttctgcaacaaagcctcgt
cttcctcaggacagagtcggtattctcgaagatcgcattgctgaagatccacgtggtgac
atcgaagcctggctgagtctaattgaggagcaccgtaggcgacacaagcacgacgatgcc
cgagctgtatttgagcgtttcctcaagcttttcccttcagcgggcgagacatgggtcgac
tatatcaactttgaaaccgagctggatgagttgccaaaggttgagcatctcttcggtcgt
tctatcccgtctgcccaatatctcggtatctactctgcttacatcgacttcatacgccgt
cgtttcaacctcactacagaccagaatgggcagaaccgccagaccgtcacccaagcctac
gaatttgtgctcaactctgttggtcttgatgtacatgctggaaagttgtggctcgactac
atcgagatgctcaagactggaccgggtgtgcttgggggcagcagctggcaagacatgcag
aagatggacacgctacgaaaggcttaccagcgcgctgttgcagtaccccacaacacgact
ctggagctgtggcgagactacgacaagttcgagatgagcttgagcaaggctactggtcgc
aagcaactccaagagacgtctcctgcgtacatgactgccagaagcgctattaacgttcta
gaaaacaacattacgaggggtatcaaccgaactaccttgcccaaactaccgcctgctgcc
gggttcgatggatatgacgactatatgaaccaagtcaagctatggaagaactggatccag
tgggagaagagcgacccgcttgagtgctcaacagacaaccgcgaactatacaacaagcgt
gtcctacatttgtacaggaacgccctcatggctctccggttctggccagagctctggtat
gaggcagctgagtggtgtttcgagaacaacttgcaggctgaaggcgacaagtttctcgtt
gatggcatcgatgcaaaccccgagagctgcctcctcgccttcaaaaaggccaaccaagtt
gaacaacgcaccgatttcgaggatggccagccaggtatcatcgccaagggtaaggccgtg
cgagagccatatcagaggctgctagacaccatctacgatctcacggcgcaagtcaagaag
cgagaagaacactccattgctcgtgcgagggagcagtttgaggcacaaaaggccgccgat
gaggctgcccgggcaaccgcccagcaaaacgcagatgccgacgacgaagatgaagtcgta
gccgcacgccgccagaaggaaaaagaagatgctttcaatggccagctacaggccatgtcc
gccggatacaatgctcagactcagaaccttaagaagacgctgacatacgcatggatagcc
ctcatgagagctatgcgacgtgtccagggtaagggagatcccaaggctgatgtcggtggc
ttccgtggcatcttcactgaggctcgtaagaaaggcaagcttcttagtgaagcctatgtc
gccagcgccctcatcgagcaccattgctaccaggagccggctgcacagaagatctttgag
cggggtatgaagttgttcccagaggatgagcagttcgccttggagtacatcaagcacctg
atcaagcttaacgactcaaccaatgctcgcgccgtcttcgagaccgtcgtcggcaagctt
acagcgaagcctgaaaatgtccaccgagccaaatccctcttcgccttcttccatgactac
gaatcccagtttggcgagctggctcaaatcaccaagttggagcagcgcatggcaactcta
ttccccgaagaccctcagctgcaccgcttctcgcaacgcttcgctagtccaaccttcgac
cccatctccgtccgtcacatcatctccccccgcacacagatgaggccggtgatgccctct
gtcatgccctctgtcatgccctctgtcatgccctcagtagaagagcaccagccgatgcct
gccgtaccagcccaaattatggcagaacagcagcaacagcgctatgtttcgccaggcata
gtaaaccccccgcatctcaacaatctccccatcaccaactctccgaaacgcccacttgag
gacgccgacgaagttgcacaaccccgcaaactcgctaggggcgaatctccactaaagggc
gcggcgggccgccgcctcgacgctgcacgccgcaatctggcaaccaccggtgctacacct
gtcggccaggcaccaggtccgccacctctgcctcgtggcgtcaacttcctccttggcata
atccctcccgcacatacctacaaagagacacgcttcaaagcagatgtccttgtggccctg
ctgcgggacgtcgccgctatccctgttcctccaggccaaggtccaccacaaccacagcgg
tggggcacaacagcgacgaccgcacagcagttgcagagcatacatgaaaaatacggcaac
ggcggtcagatggcaatgcactcgccccttgctggtgcaaacccttggggatag
DBGET
integrated database retrieval system
