Pyrenophora tritici-repentis: 6344725
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Entry
6344725 CDS
T10215
Symbol
PtrM4_049560
Name
(RefSeq) TPR-11 multi-domain protein
KO
K12600
superkiller protein 3
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
6344725 (PtrM4_049560)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6344725 (PtrM4_049560)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
6344725 (PtrM4_049560)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_8
TPR_17
TPR_12
TPR_19
TPR_14
TPR_16
TPR_CcmH_CycH
TPR_11
E_motif
Motif
Other DBs
NCBI-GeneID:
6344725
NCBI-ProteinID:
XP_001936799
UniProt:
B2W908
LinkDB
All DBs
Position
10:2959124..2962552
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AA seq
1142 aa
AA seq
DB search
MASHADSAHDLLDLDISTLRQFVELFPNEGLSKVITGWLSSGISKYPLTDEGDSRQGPDL
SEGGVALTQDVPVSQEDCLVLMTEGIGEAGKSPLAHCLLGDYYLFLEEYESAVEITRKGL
KYAAQEAKKTDLSFQRTRDALSSTLGTALVYYQAPRNHAEAKAIFESILKRKPQFTAALI
GIGLVLEEEQEYGQAFEFLEKALQQDPSNGRIGAESAWCQALAGDYKTGLERLQGYLEYP
ELDASKQRGRELRAQTLYRIGVCLWELDPSKAARKDRQRTYAKLLAAIKANPNYAPAYTL
LGIFYEDYNKDRKRARQCFQKAFELSPSEVVAAERLARLFANQGEWDIVEVVSQRVVDSG
KARQTPGSKRKGVSWPFSALGVVQMNKQEYQKSIVSFLSALRISPDDYYSYVGLGESYHN
SGRYNSASRAFNYAENPTDGVVLKRTDEERWFTKYMLANVNRELSEYDDAISGYEAVLAD
RPKEFGVSIALLQTLVEKAWHCIETGFFGEAIDSATRGIEVAATITEYKPDAFNLWKAVG
DACSLFSWVQERLKQFPFELMENVLRSPSDMRIDLDEHKDVDGLGQNDLEKLSKDDDTPL
AKTLKASILAQKRAISSCAHQIHAQAVAWYNLGWTEYRAHVCLEQEGIEESKLTTYLRAA
MKCFKRAIELEAGNSEFWNSLGVITTTLSPKVAQHAFVRSLHLNERSVHTWTNLGVLYLL
QNDHELAHTAFSRAQSQDPDYSLAWVGEGIIALLTGNSNEALSHFTHAFELSESSLLLTK
RQYAASAFDFLVSSPSSSSNITNLIQPLFALQQLSLQAPYDIPHKHLAALFLERVGDYDA
AVIALQAVNENVEQEYEKSESLASLARVASAKADLARNLLAVKLYQAAVEEAETALDLLS
ELDHDEKQSTMSGDQLARTKLSAHLTAGLAHYFSGSFDAAIPYFRKSLETTSSNPDIICI
LAEVLWAKGGDNEKQVARDQLFTAIEKHEGHVGLLTLIGAMTVLDDDLETMEAIKDDLDR
MRANKQLTDEQLARVEKVIEAISLSLGGEEQELHEAQRSIMLSPWKHTGWVELADATDGN
LFCSTIARENAMRNAPPNGTLDAGSLAGAMSNTGNVGDAQRAILLAPWCIHGWAGLYECI
KT
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctcacgccgacagtgcgcacgacctgctggacctcgacatctcaacattacgc
caattcgtcgagctattcccaaatgagggtctttcgaaagtcatcacgggatggttgagt
agcggcatttcaaaatatccattgactgatgagggtgactcgagacaagggcccgaccta
agtgagggcggggtggcgctcacgcaagatgtgccagtgtcgcaagaggattgtttggta
ctaatgactgagggcatcggcgaggctggcaagtccccactcgcgcattgcttgcttggc
gactactacctttttctggaagagtacgagagcgcagtagagatcacacggaaaggtcta
aaatacgccgcacaagaagcaaagaagaccgacctgtcatttcaaagaactcgcgatgct
cttagcagcacccttggtacagccttggtctattaccaagcccctagaaatcacgcagaa
gccaaagctatcttcgagtcaattctgaaacgcaagccacagttcactgccgctctcatc
ggtatcggattagtgttggaggaagagcaggaatatgggcaggcttttgagtttcttgag
aaagctctacaacaagatccttcgaatggccgcatcggtgctgaatcagcatggtgtcag
gcacttgcaggcgactacaagactggtctagagagacttcaagggtatctcgaatacccc
gaactagatgcatccaagcagcgtggccgcgagcttcgtgcgcagacactctatagaata
ggcgtctgtctatgggagcttgatccttccaaagctgcgcgaaaagaccgacaaaggacg
tatgcaaaattgctagcagcgatcaaagcaaaccccaactatgcgcctgcatacacgctt
ctcggtatcttctatgaagactataataaagatcgcaagcgagcaaggcagtgtttccaa
aaggccttcgagctctcgccctcagaggttgttgcagctgagcggctagctcgcctcttc
gccaaccaaggcgagtgggatatcgtggaggtcgtctcacaacgagtggtcgattcgggc
aaggctcgtcaaacgcctggctcaaagcggaagggcgtgagctggccattttcggccctt
ggtgttgtacaaatgaacaagcaagagtaccagaagagtatcgtctcttttctatcagct
cttcgtatcagtcccgatgactattactcgtacgtcggcctaggcgagagttaccacaac
tctggacggtacaattcagcatcccgtgctttcaactacgctgagaatcccacggacggc
gtcgttctaaaaagaacagacgaggagagatggttcacaaagtacatgctggctaatgtc
aatcgcgagttgagcgagtatgacgatgccatatcggggtatgaagccgtactggcggat
cgtcccaaagaatttggcgtttcgatagcacttctacagacgctcgtggagaaagcttgg
cattgtatcgaaaccggcttctttggagaggctatcgacagtgctacccgcggcatcgaa
gtagcggccacaattaccgagtacaagccagacgccttcaatctgtggaaagctgtcgga
gacgcgtgcagtctgtttagttgggtccaagagagactgaagcagttccccttcgagctg
atggaaaatgtgctgcgtagtccgtcagacatgcgcatcgacctcgatgagcacaaagac
gttgatggactgggacaaaatgatttggagaagctttctaaagatgacgataccccactg
gctaagactctcaaggcatccatccttgcccagaagcgagccatatctagttgcgcccac
caaatacatgcccaagccgttgcgtggtataatcttggctggactgagtacagagcacat
gtttgtttggagcaagagggtattgaggaatccaagctcactacttaccttcgagcagcc
atgaagtgcttcaagcgcgccatcgaattagaagctgggaattcggaattctggaattca
cttggtgtcatcacgacgacactgagtccgaaggtcgcccagcatgctttcgttcgatca
ttacatctcaacgagagaagcgtacacacatggacaaatcttggggtcttgtatctccta
cagaacgaccatgagcttgcacatactgccttctcccgggcacagtctcaagatcccgat
tactcgttagcttgggtcggcgaaggcatcattgcgttgcttacaggaaattccaacgaa
gctctatctcattttacacatgcctttgagctctcggaatcatctctgcttcttacgaag
cgacagtatgcagcgtcagcatttgacttccttgtatcatcaccttcatcttcgagcaac
attacgaatctcatccagcctctcttcgcgcttcagcagctgagcctgcaagctccttac
gatattccacacaagcatctcgcggctctatttctggagcgtgttggtgattatgacgca
gctgtcattgctctacaggctgtgaatgagaatgttgagcaagaatacgaaaagtctgag
tcgctggcatctcttgctcgtgttgcatctgcgaaagcagacttagctcgtaaccttctt
gccgtcaaattgtatcaggctgctgtagaggaagccgagaccgcgctagacctgttgtca
gagctcgatcacgatgaaaagcaatccaccatgtccggcgaccaacttgcaaggaccaaa
ctatcagcacacctaactgccggattagcgcattatttcagcggatcgttcgatgcagcc
ataccgtatttccgaaaatcgctcgagactactagctccaatcccgacatcatctgtatc
cttgcagaggtactgtgggcaaagggcggagacaacgagaagcaagttgcccgcgaccag
ttgtttacagcgatcgagaaacacgaaggccatgttgggctcctaaccttaattggtgcg
atgacggtacttgacgatgatttggagaccatggaagctatcaaagacgacttggatcga
atgcgcgcaaacaagcagctcaccgatgagcagctagctcgggtagagaaggtgattgaa
gccatctcactgagcctaggcggcgaagagcaagagttgcatgaggcgcaacgcagtata
atgttgtcgccctggaagcacacaggctgggtagagcttgcggatgctacggatggtaat
ctattttgcagtacgatcgcacgagaaaatgcgatgcgcaacgcacctccaaatggtacc
cttgatgccggcagtctggcgggtgcaatgagcaatacaggcaacgtcggggatgcgcag
agggcgatattactggcaccttggtgcatacacggttgggccggtctatacgagtgcatc
aaaacatag
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