Pyrenophora tritici-repentis: 6345870
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Entry
6345870 CDS
T10215
Symbol
PtrM4_140950
Name
(RefSeq) DUF3453 domain containing protein
KO
K06100
symplekin
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
6345870 (PtrM4_140950)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptrr03021
]
6345870 (PtrM4_140950)
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6345870 (PtrM4_140950)
Transcription machinery [BR:
ptrr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
6345870 (PtrM4_140950)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
6345870 (PtrM4_140950)
U7-dependent histone pre-mRNA processing factors
6345870 (PtrM4_140950)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SYMPK_PTA1_N
T-box
Motif
Other DBs
NCBI-GeneID:
6345870
NCBI-ProteinID:
XP_065960413
LinkDB
All DBs
Position
8:<1649203..>1651843
Genome browser
AA seq
754 aa
AA seq
DB search
MSSQTIQQMESARSLALGDGRYYPTIIPGVLPIIGYSEDQSVDIQRWGADFLAEAFASPT
WPQEIKQNNAPSVLVTLKAYLDNVDDKSVIKSSIQAAASVYPLVYKHTVSDPSDAQKWQL
MAGIKSNILRRMDTAAPGVRICCVKFLQQVVLVQTPGIADPRRADPNDISLSLVPRDHPL
IPYASLEAEGHGLLDRLLDIIHGDHSDGLLVTATLNSLGMLIHRRPNAANKIMNSVFNFN
PLKLANSPMTPKNKVIMKSIERTTRALLVNIMKRNPENPVNGRIQQFLERMHRTRVEVFD
ESNRKRPAPSEPTDGLDQAKRQRLIAEPPSRTPSVQPLPPGEVSWRQLYTLNSEGSTANF
DVQNFRDPEQLLRIVIPVLQSVNPVKLEQAINAVRARYQILRQTAASQPQRPPTAPAAED
EEEYEPDFEPEDAEQIINKMDGVPSDPFASQSGPTTALAPYKLPEAPPLSEQDVQKYGDM
TVQRAFGMLSSVDETQKSRTNKGGFNRLAAIDYTRDAWVTILSRLATRASAGLDDPEEGI
KDEYAVKSAKGNTKLSDAVRDGLYQYIMYDWKKRIDVAISWLNEEWYNDMVLSQAAEDSA
TNGSSNGHTKSKPPKGNYHRCALRLIDGILPYIEHTDKILLRFLSEIPTIDYSILVRLKK
MAEDPERIDLACNALHYLYMFRPPVRKIVVDILAEMWVENDRAKPSARKLLIRWRPEVLG
EERVATPVVKSEGGGDTQMIKESANGALEVKAAS
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgcaaacgattcagcagatggaatcagcccggtcgctcgcgctaggcgacggt
agatactatcctaccatcataccaggcgtgcttcccatcatcggctacagtgaagaccag
agtgtcgacattcagcgatggggcgccgactttctagctgaggcttttgcatcgccaacc
tggccccaagagatcaagcagaacaacgcaccttcggtgcttgttacgttgaaagcctac
cttgacaatgtcgacgacaagagcgtcatcaagagctccatccaggcggccgcgagtgtg
tacccgctggtctacaaacacactgtctccgaccccagcgatgcgcaaaagtggcagctc
atggctggcatcaagtcgaatatcctgcgccgaatggatacagctgctccaggtgtgcgc
atatgttgcgtcaagtttctccagcaagtcgttctggtacagacaccaggcattgcagac
ccccggcgagccgatcccaacgacatctccctttctctcgtaccgcgcgatcatcctctc
ataccatatgcaagcctcgaggctgaaggacatggattattagacaggttgctggacatt
atacacggagatcacagtgacggccttctcgtgactgctacgctgaatagtttgggcatg
ttgatccatcgccgaccaaatgctgcaaacaagatcatgaatagtgtcttcaacttcaac
cctttgaagcttgccaattcgcccatgacacccaagaacaaggtcatcatgaagtcgatt
gagcgtaccacacgcgcgctcttggtgaacatcatgaagcgaaatcctgaaaacccagtg
aacgggcggatacagcagttcttggagcgcatgcatcgcacacgggtggaggtctttgat
gaatctaaccgtaaacgcccagctcctagtgaaccgactgatggacttgatcaagccaag
agacagcgattgatcgctgaacctccaagccgtacaccatctgtccaaccgctaccgccc
ggtgaagtgagctggcgacaactgtatactctgaactctgaaggaagcactgcaaacttt
gacgtgcagaatttcagagatccggagcaattgctaaggattgtcatacctgttctgcag
tcagtcaacccagtaaagctagagcaagctatcaacgcggtgcgtgctcgttaccagata
ctccgccagaccgctgcaagccaacctcaacggccacccacagctcctgctgcagaagac
gaagaagaatacgaacccgacttcgagcctgaagatgccgaacagatcatcaacaaaatg
gacggcgtcccttcagatcctttcgcgtctcagtccggaccaaccacggcgctagcgccc
tacaagttgcccgaggcacctccgttatcagaacaggatgttcagaagtacggtgatatg
actgtacaacgagccttcggcatgctgagcagtgtagatgagacgcagaagagcaggacc
aacaaaggcggctttaatcggctcgctgccatcgactacactcgagacgcatgggtcact
atactgtcaagattggccacgcgcgcaagtgctggccttgatgaccctgaagaaggcatc
aaggatgagtacgccgtcaagagcgcgaagggcaacacaaaactcagcgatgctgtaaga
gatggactgtaccagtacatcatgtacgactggaagaagcgcatcgacgtcgctatctct
tggttaaatgaggaatggtacaacgacatggtcctcagccaagccgccgaagactctgcc
acaaatggctcgtccaacggccacacaaagtcgaaaccaccaaaaggaaactaccaccgt
tgcgcgctccgtctcatcgatggcatactcccatacattgagcacacagacaagattctt
ctccgtttcctttcggaaatccccactattgactacagcattctggtgcgcctcaagaag
atggctgaggatcctgaacgcatcgacctggcgtgtaacgcgttgcactatctttacatg
ttcaggccacctgttcgaaagattgtggtcgacatcctagcggagatgtgggtggagaat
gatagggcaaagccaagtgcacgcaagctgttgatcaggtggaggccagaggtgcttggc
gaggagagggtagccacacctgtggtcaagagcgaaggagggggcgacacgcaaatgatc
aaggagagcgccaatggcgcccttgaagtcaaggctgcttcttaa
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