Pyrenophora tritici-repentis: 6346023
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Entry
6346023 CDS
T10215
Symbol
PtrM4_139140
Name
(RefSeq) SrmB, Superfamily II DNA and RNA helicase
KO
K03257
translation initiation factor 4A
Organism
ptrr Pyrenophora tritici-repentis
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6346023 (PtrM4_139140)
03012 Translation factors [BR:
ptrr03012
]
6346023 (PtrM4_139140)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ptrr04147
]
6346023 (PtrM4_139140)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
6346023 (PtrM4_139140)
mRNA cycle factors
Stress granule specific factors
6346023 (PtrM4_139140)
Translation factors [BR:
ptrr03012
]
Eukaryotic type
Initiation factors
eIF-4
6346023 (PtrM4_139140)
Exosome [BR:
ptrr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
6346023 (PtrM4_139140)
Exosomal proteins of bladder cancer cells
6346023 (PtrM4_139140)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
AAA_30
CMS1
HJURP_C
Flavi_DEAD
fragilysinNterm
Motif
Other DBs
NCBI-GeneID:
6346023
NCBI-ProteinID:
XP_001938082
UniProt:
B2WCP1
LinkDB
All DBs
Position
8:complement(1213811..1215367)
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AA seq
396 aa
AA seq
DB search
MADKGLEDVPEGQIESNYDEITDSFDNMNLKAELLRGVYAYGFERPSAIQQRAIMPVIKG
NDVIAQAQSGTGKTATFSISTLQKIDSNVKACQALILAPTRELAQQIQKVVVAIGDFMDI
QCHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSR
GFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFY
IAVEKEDWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQ
RDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKG
VAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaaaggtcttgaggatgtgcccgagggccagatcgagtccaactacgatgag
attaccgactctttcgacaacatgaacctgaaggctgagctcctccgtggagtctacgcc
tacggtttcgagcgtccttcggccatccagcagcgcgccatcatgcccgtcatcaagggc
aacgatgtcattgcccaggcccagtccggtactggtaagacggctaccttctccatctcg
accctccagaagatcgactcgaacgtcaaggcctgccaggcgctcatcctcgcccccacc
cgagagctcgcccagcagatccagaaggtcgttgtcgccatcggtgacttcatggacatc
cagtgccacgcctgcattggtggtaccagcgtccgtgacgacatgaaggctctccaggac
ggcccgcaggttgttgttggtactcccggccgtgtccacgacatgatccagcgtcgtgtc
ctgaagaccgaccacatgaagatgttcgtccttgacgaggccgacgagatgttgtctcgc
ggtttcaccgagcagatctacgacatcttccagcttctgccccagtcaacccaggtcgtc
ctcctgtccgccaccatgccccaggacgtccttgaggtcaccaccaagttcatgcgtgac
cccgtccgtatccttgtcaagaaggacgaacttaccctcgaaggtatcaagcaattctac
attgctgtcgagaaggaggactggaagcttgacaccctgtccgacttgtacgagaccgtc
accatcacccaggctgtcatcttctgcaacactcgcaggaaggtcgactggctcaccgac
aagctcactgcccgtgacttcaccgtctccgccatgcacggtgacatggaccaggcacag
cgtgatgtcatcatgaaggaattccgttccggatcttctcgtgtcctcatcgccactgac
cttttggcccgtggtatcgatgtgcagcaggtctcccttgtcatcaactacgacttgccc
gccaaccgtgagaactacatccaccgcatcggtcgtggtggacgtttcggacgtaagggt
gttgccatcaacttcgtcaccgccgacgatgtccgtatgatgcgcgaaatcgagcagttc
tacagcacacagatcgaggagatgccaatgaacgtggctgacctcatctaa
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