Pyrenophora tritici-repentis: 6346290
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Entry
6346290 CDS
T10215
Symbol
PtrM4_136250
Name
(RefSeq) RPB4, RNA polymerase II, fourth largest subunit
KO
K03012
DNA-directed RNA polymerase II subunit RPB4
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03020
RNA polymerase
ptrr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
6346290 (PtrM4_136250)
09124 Replication and repair
03420 Nucleotide excision repair
6346290 (PtrM4_136250)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptrr03021
]
6346290 (PtrM4_136250)
03400 DNA repair and recombination proteins [BR:
ptrr03400
]
6346290 (PtrM4_136250)
Transcription machinery [BR:
ptrr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Pol II specific subunits
6346290 (PtrM4_136250)
DNA repair and recombination proteins [BR:
ptrr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
6346290 (PtrM4_136250)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb4
ATPase_2
Motif
Other DBs
NCBI-GeneID:
6346290
NCBI-ProteinID:
XP_001938345
UniProt:
B2WDF4
LinkDB
All DBs
Position
8:<478352..>478987
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AA seq
176 aa
AA seq
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MEGEDTAPPQRHEPPVFKAPRLVSRPKPPAQQEEEIGSEIKLGDFEDVHALSVSEARAVV
TAVHEARKKKDPENNPLRDRIHNDSGVIASFLDYLDNFARYKEEDSLHSIAALFDAHPEI
SVVEKALLGTLTPDTAEEATTLIPSLKMDEDELQLILDELNKMRELEKAESLAKGK
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atggaaggagaagacactgcgccgcctcagaggcacgagcctcccgtcttcaaggccccg
cgtcttgtctcgcgcccaaagcccccggcgcagcaggaagaagagattggctccgagatc
aagctgggcgattttgaagatgtccacgccctttccgtctccgaggcccgcgccgtcgtc
acagccgtccacgaggcgcgcaagaagaaggaccccgagaacaacccactgcgcgacaga
atacacaacgacagcggggtcatcgcctccttcctcgactacctcgacaactttgcgcgc
tacaaggaggaagacagtctgcactccattgccgccctcttcgacgcccaccccgagatc
tccgttgtcgagaaggcgctgctgggcacacttacccccgataccgccgaggaagccact
accctcattccctcgctcaagatggacgaggacgagctccagttgattctcgatgagctg
aataaaatgcgtgagttggaaaaagctgagagcttagccaagggtaaatga
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