Pyrenophora tritici-repentis: 6347248
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Entry
6347248 CDS
T10215
Symbol
PtrM4_034330
Name
(RefSeq) pre-splicing factor ATP-dependent RNA helicase prp16
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
6347248 (PtrM4_034330)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptrr03041
]
6347248 (PtrM4_034330)
Enzymes [BR:
ptrr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
6347248 (PtrM4_034330)
Spliceosome [BR:
ptrr03041
]
Complex C
Other components
Step II factors
6347248 (PtrM4_034330)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
T2SSE
nSTAND3
SRP54
CCDC174_GRSR
NB-ARC
PhoH
AAA_7
GIPC1_GH2
Cas3-like_C_2
TsaE
AAA_16
Motif
Other DBs
NCBI-GeneID:
6347248
NCBI-ProteinID:
XP_001939294
UniProt:
A0A2W1GRV0
B2WGA6
LinkDB
All DBs
Position
1:complement(8874026..8877670)
Genome browser
AA seq
1214 aa
AA seq
DB search
MDDLENLEFLSLVSKVTSEIQNHLGVSDKTLAEFVIDQHAKCKGVTDFKDQLEAMGAEFP
QSLVESIDRLILTLHPKYKNKGAKAAGANGQDGGDATDRKTRVFKGLAIPDKEVDYEVAD
EAPANEAPDVDALDDTFAMLEGLAGKAPGKPKARSRKRSMSPYDSDDDIARSKRYRRRNA
SGSRSRSRSTSPRRGREQNDELVFEDEFGRTRTVKPSNKQRTRKKYRDEDLDEFRRPPTP
ELDDEPVLYKIYNGKVTGIKDFGCFVNIQGVKGKVDGLVHVTQMMEGRVNHPSDLVSRWQ
EVKVKVIKTENGRISLSMKEVDQQTGRDLAPGKRIASFGTGANSSGLGGIPGVDSSVPVV
EDGYNGRKNGMRKRMTSPERWEIKQLIASGVIPKSDYPNIDEDYNAHINGEGGFEEEEDV
DIEVREEEPPFLAGQTKQSLELSPIRVVKAPDGSLNRAAMAGDTLAKERRDLKQQEAQEK
AAKEAANVDLSSQWNDPMAQQRQFASDLRNTRTNEPAQALPEWKKISTNSRETSFGKRTN
MSIKEQRESLPVYKFRNKLLEAIANNQILIVVGDTGSGKTTQMTQYLAEAGYGNELVIGC
TQPRRVAAMSVAKRVAEEVGCALGSEVGYTIRFEDKTSPETRIKYMTDGILQREILLDPM
LSKYSCIMLDEAHERTIATDVLFGLLKKTLKRRPDMKLIVTSATLDADKFSEYFYKCPIF
SIPGRTFPVEVMYSREPESDYLDAALVTVMQIHLTEPAGDILLFLTGKEEIDSSCEIISE
RMKALGPNVPELMILPIYGALPSEVASRIFEPAPNGARKVVIATNIAETSLTIDGIYYVV
DPGFVKQSSYDGKLGMDRLQITPISQAQARQRSGRAGRTGPGKCFRLYTEAAFQNEMLPT
TIPEIQRQNLSNTILMLKAMGINDLLHFDFMDPPPTNTMLTALEELYQLGALDDEGLLTR
LGRQMADFPMDPSLSKSLIKSVELQCSDEILTIVAMISATQNVFHRPRDKQQQADQKKQK
FNDPSGDHITLLNVYNGWKQGGFSTPWCHENFIMPKNMQRVRDVRNQLLQIMARHKHQVV
SCGRNTIKVRQALCSGFFRNSARKDPAEGYKTLVEGTPVYLHPSSSLFGKPAEHVIYHSL
VETTKEYMHFCSAIEPKWLVEAAPTFFKVAPTDRLSKRKKAERIQPLHNKFAGEDDWRLS
AQRRAGRGGGGTWG
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atggatgacctggaaaacctcgagttcctctcactcgtgtccaaagtgacttccgaaata
caaaatcatctcggggtatccgacaaaacgctcgccgaattcgtcatcgaccagcatgcg
aaatgcaaaggtgtgacagacttcaaggaccagctagaagctatgggggccgaatttccg
cagagtcttgtggaaagtatcgaccgtctgattctgacactacatccaaaatacaagaac
aagggcgcaaaagccgcgggcgcaaatgggcaagatggtggagatgcgacagatcgcaag
acgcgtgtcttcaagggcctcgcgattcccgacaaagaggtcgactacgaggtagcggac
gaagcgcctgcaaatgaagcgcctgatgtcgatgcgctggacgatacgtttgccatgttg
gaaggtctcgcaggcaaggcgccggggaaacccaaggcgaggtcgcggaagaggagcatg
agcccatatgatagcgacgatgatattgccagaagcaagcgatacaggaggaggaatgcc
tcaggctcgcgctcacgctctcggtcaacgagcccacgccgagggcgggagcagaacgac
gagctggttttcgaggacgaatttggacgcacacgaactgttaagccaagcaacaagcaa
cgaacgcgcaagaagtaccgcgacgaagatctcgacgaattccgacggccgccaactccc
gaactcgatgacgagccggtactatacaaaatctacaatggcaaggtcacaggcatcaag
gactttggctgcttcgtcaacatccagggcgtcaagggcaaagtggacgggctagtacat
gtcacacagatgatggagggtcgcgtcaaccacccgtctgatcttgtatcgagatggcag
gaggtcaaggtcaaggtcattaagacggaaaacggcaggatatcgctgtcgatgaaggag
gtggatcagcaaacaggtcgcgaccttgcgcccggcaagcggatagcgtctttcggaacc
ggcgcaaactcatcgggactgggaggcataccaggggtcgacagttctgtgccagttgtc
gaagatggctacaatggtcgcaagaacggtatgcgaaagcgcatgacttcgccagaacgt
tgggaaattaaacagctcattgcttctggtgtaataccgaagtcggactacccgaacatc
gacgaggactacaacgcgcacattaacggcgagggcggtttcgaggaagaagaggacgtg
gatattgaagtacgcgaagaggaacctccgttcctggctggccagaccaagcaatcgctc
gagctctccccgattcgagttgtcaaagcacctgacggctcgctcaatcgcgctgccatg
gccggagatacgctcgccaaagaacgccgtgatctaaagcagcaggaagcccaagagaag
gccgcaaaggaggcagcgaatgttgacctaagcagccagtggaacgatcccatggctcaa
caacgccagtttgcaagcgatcttcgcaatactaggaccaacgagcctgctcaagcattg
cctgaatggaaaaagatctccacgaatagccgggaaacctcatttggcaagcgtaccaac
atgagcatcaaggaacaacgagagtcgttgcctgtctacaaattcaggaacaagcttcta
gaggccatcgcaaacaaccagatcctcattgtcgttggtgatactggatccggaaagacc
acgcaaatgacgcagtatcttgctgaggctggatatggcaacgagcttgtcatcggttgc
actcagccgaggcgtgtagctgcaatgagtgttgccaaacgtgtcgccgaagaggttggt
tgtgcccttgggagtgaggtcggttacactatacgattcgaagacaagacctcaccggaa
acccggatcaaatatatgacggatggtatcctgcagcgtgagattctcctagatcctatg
ctgtcaaagtatagttgtatcatgcttgacgaagcccacgaacgtaccatcgccacagat
gtcttgttcggactactgaagaagaccctcaagcgacgcccggatatgaagcttatcgtt
accagtgccaccctcgatgccgacaagttctccgaatacttctacaaatgccccatcttc
tccatcccaggtcgaacctttcccgtagaggtcatgtacagtcgggaaccagagtccgat
tacctcgacgcagcgcttgtgacggtcatgcagatccatctgacggagccagcaggtgat
atcttgctcttcttgacgggtaaagaggagattgattcatcctgcgagatcatatccgag
cgtatgaaagctcttgggccaaatgtgccggaactcatgatcctacccatttatggagct
ctgccgtcagaggttgcatctcgtattttcgaacccgcgcccaatggagcccgcaaagtc
gtcattgctacaaatatcgccgaaaccagtttgactatcgatggtatatactacgtcgta
gatccgggttttgtgaagcagagttcgtacgatggaaagctgggcatggatcgtctgcag
attacgcccatctcgcaggcgcaggctcgtcagagaagcggaagagcaggaagaacaggt
ccaggaaagtgttttcgtctgtataccgaagccgcgttccagaatgagatgttaccgacg
actattccggagatccagcgccagaacttgtcgaatacgattctgatgctcaaagccatg
ggcatcaacgatttgttacattttgacttcatggacccaccgccgactaatactatgttg
acagcactagaagagctgtatcaactaggtgcattggatgatgaaggactgcttacgcgt
ctgggtcgacagatggccgacttccctatggacccttcactctcgaaatctctcatcaag
tcggtcgaactccaatgctcagacgagatcctcacaatcgttgcgatgatcagcgccaca
cagaacgtctttcaccgaccgcgagacaagcaacaacaagccgaccaaaagaagcagaag
ttcaacgatccctctggtgatcatatcaccctgctcaatgtgtacaatggctggaaacaa
ggcggtttcagcacgccctggtgtcacgagaacttcatcatgcccaaaaacatgcagcgc
gttcgcgacgtgcggaatcagttgctacagatcatggcgcgacacaaacaccaagtcgta
tcctgcggtcgcaacacgatcaaagtcaggcaggcgctctgctcagggttcttccgcaac
tcggctcgtaaagatcctgccgagggctacaagacgctcgtcgaaggcacgcctgtctac
cttcatccatcgtcttctctgtttggcaagcctgcggaacacgtcatttaccactcactc
gttgagacgacaaaggagtacatgcacttttgctctgccatcgaacccaagtggcttgtc
gaagcagcgccgacgttcttcaaggtggcacctacagaccgattgtccaagagaaagaag
gcggagaggatacagcccctgcataataagtttgcgggtgaggatgattggagattgagt
gctcagagaagggctggaaggggtggaggaggtacatggggctaa
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