Pyrenophora tritici-repentis: 6347251
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Entry
6347251 CDS
T10215
Symbol
PtrM4_034360
Name
(RefSeq) topoisomerase II-associated protein PAT1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
6347251 (PtrM4_034360)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6347251 (PtrM4_034360)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
6347251 (PtrM4_034360)
mRNA degradation factors
5'-3' decay
Decapping complex
6347251 (PtrM4_034360)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
6347251
NCBI-ProteinID:
XP_065966277
LinkDB
All DBs
Position
1:<8883763..>8886438
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AA seq
777 aa
AA seq
DB search
MSFFGFDTSLPRDHGHASNAPGFGQHDAFAALGGGAIEGDVIDFEETYDGLGDQLDDEAD
DLNDDTFGGGPATQQSVGKHFDFAGQTSMVSSTLQEEQMLYQARNQASKPNRTGYESYKD
PEYIPQLEARADIWGLKPKASASQQQQQSSPQPAMATQQAPPSRKVMSMEEVEAMMRAQS
IGNDPRATPPVRAELPDHPIRSQPPQQPTILQRQRPQSNEHVAQQQRQGPPQPQAQGPSG
QPRHILQNPNRLSGQGQPMVQTGPQAGRGQPAAHNRGPSFPGMVITHPEQLLQLSEAERA
AFLEEDAKRAKRNHKIALLAKDNGLMTPQDKNFITRIQLQQLMTATGNLEERGPEAAIAE
DFYYQVFSQIRGAPRHNPQQPASQFAQTYLFQTNNRFGARRQGRGGDNHMQRMEQQIQRA
VEAAKARPKARQLVVEGSLGKIAFSNSKTPRPLLNLKRPETNDKLPKSHKSSIADRKEAL
RNIEAVYRSLMQMEDHERAMPPPIQEGSPPEAIQAHMEWRSKIDVLHEQLWSNTKIMEPI
NPSAPHPFISILSHAKGKKVIPRLFRHINEQERITVVTMIVVHLDALSVVGHAIATPDEP
LSAAIREEVDLFSQTVMSPIHAHISDAPLNIVIGLLGLVLDRTNLHVVARSKIGLTLLTF
LISRAELLKQSAPEMVTDWQQWTNLYNRLFDVIEPVLPYLFPGSINDTDDMYIWQFLAAM
GVGASPEQQQRLVLGVKDRVMETVAVSKALPADMASARTSNVNLFMRAIGLDVELLG
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgtctttctttggctttgatacgagcctgccgcgtgatcacggtcatgcttctaatgct
cccggctttggccagcacgatgccttcgccgcgctcggcggtggggcaatcgaaggcgat
gtcattgactttgaagaaacctacgacggcctcggcgaccagctcgatgatgaggctgat
gatctcaatgacgacaccttcggaggtggtcctgcaacgcagcagtctgtgggcaagcac
tttgactttgccggccagacgtccatggtctcgagcacactgcaagaggagcagatgctt
taccaggctcgaaaccaagcctccaagcccaatcgaactggctatgagagctacaaggac
cccgagtacatccctcagctcgaggctcgtgccgacatctggggcctcaagcccaaggcg
tcggcttcgcagcagcagcagcaatcctcgccacagcctgccatggctacccaacaagct
cctccatcgaggaaggtcatgagcatggaggaggtcgaggccatgatgcgcgcacagtct
attggtaacgaccccagggctacccctccggttcgagctgagctcccggatcaccctatc
cgatcccagccacctcagcagcccaccatcctccagcggcaaagacctcagtcgaacgaa
catgtcgctcagcaacagagacaggggccaccgcagcctcaagcccaaggcccatctgga
caaccccgtcacattttgcagaaccccaaccgtctctctggtcaaggtcagcccatggtt
cagactggccctcaagctggccgtggtcaacctgcagcgcataacagaggtccttcgttt
cccggcatggtcattactcacccagagcaacttcttcaactatcagaggcagaacgtgcg
gccttccttgaagaagacgccaagcgagctaagcggaaccataagattgctttattggcc
aaagacaacggcctgatgacaccccaagataagaatttcataaccagaatccagttgcag
cagctgatgactgccactggcaacttggaggagaggggacctgaagcagccatcgccgaa
gacttttactaccaggtcttcagccagattcgcggtgctccacgtcacaatccccagcag
ccagccagtcaatttgcccagacctacctgttccagaccaacaacaggtttggcgcccgc
agacagggtcggggaggtgacaatcacatgcaacgcatggaacagcagattcagcgagcc
gttgaagctgccaaagcgaggccaaaggcccgacagcttgttgttgaaggaagtcttgga
aagattgcgtttagcaactccaagaccccacgtccgctgctcaatctcaagcgccccgag
accaacgacaagcttccaaaatctcataagtcttctattgccgatcgcaaagaagctctc
cgcaacatcgaggctgtatacagaagcctcatgcagatggaagaccatgagcgagccatg
ccaccaccgatccaagaaggcagtccccctgaggctattcaggcacatatggaatggcga
tcgaagattgacgtcctccacgagcaactctggtcgaacacgaagatcatggaacccatc
aaccccagcgcacctcaccccttcatttctatcctctcgcacgccaagggaaagaaggtc
attccgcgcctcttccgccacatcaacgaacaagaacgtatcacagtcgtgaccatgatt
gtggttcaccttgatgctctctcggtagttggccatgccatcgccacgcccgatgagcct
ttgagcgcagcgatccgagaagaagtcgaccttttctctcaaactgtcatgtcgcccatc
catgcgcacatctcagacgcgcccctgaacattgtcatcggtcttcttggtcttgtccta
gatcgtaccaacctccatgtcgttgctagaagcaagattggtctgacgctactgaccttt
ctgatttctcgtgccgaactcctgaagcaatcagctcccgagatggttaccgactggcag
caatggaccaacctttacaaccgtctgttcgacgtcatcgagcctgttcttccttatctg
ttccctggaagtatcaacgataccgacgacatgtacatctggcagttcctcgccgcgatg
ggtgtgggagctagtcccgagcagcaacagaggcttgtgctcggcgtcaaagatcgtgtt
atggaaactgtggctgtcagcaaggcgttgccagctgacatggcgagtgctcgaacatcg
aacgtgaatcttttcatgagggccatcggtctggatgtggaacttcttggatga
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