Pyrenophora tritici-repentis: 6347267
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Entry
6347267 CDS
T10215
Symbol
PtrM4_034540
Name
(RefSeq) NRDE-2 multi-domain protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
6347267 (PtrM4_034540)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6347267 (PtrM4_034540)
03041 Spliceosome [BR:
ptrr03041
]
6347267 (PtrM4_034540)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
6347267 (PtrM4_034540)
Spliceosome [BR:
ptrr03041
]
Complex B
Other components
Prp19-related factors
6347267 (PtrM4_034540)
Complex C
6347267 (PtrM4_034540)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_15
TPR_8
Mad3_BUB1_I
TPR_16
TPR_10
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
6347267
NCBI-ProteinID:
XP_001939313
UniProt:
B2WGC5
LinkDB
All DBs
Position
1:complement(8926731..8929293)
Genome browser
AA seq
836 aa
AA seq
DB search
MPGELLRTVTGLSRPTKRKMEPSSDLFLITDQDVAYEQDIQRNPGSVKPWLDYYSFKKSR
GSILEQAFVLERAVTTLPRSYKLWKLYLELRTKHLTKKNPAKFAPHYVKVNALFERALVL
LNKMPRIWEMYLNFLMQQPLVTTTRRTFDRALRALPLTQHNRIWALYRPFATSASGETAV
KIWRRYMQIHPEDAEDFIELLKDMRKYTEAVKKYMEILNNPRFKSKEAKGPFQFWTEMID
LIIDHAKEIDTSDDSGIDVEKIIQSGISKFPDQRGILWVGLARYWMHKGEYERARDVFEE
AVTTVMTVRDFSVVFDTYVEAEEAMIGIKLNEAAARSEKGNMDEPADADLDIRMVRFESL
MQRRPFLLNDVMLRQNPHNVIEWEKRVALWGDNKKEVVQTYTDAIAAINPKKAIGKFHEL
WTNYAKLYEAGGDLQNARIIMEKAVKVPFKSVSELAEMWCEWAEMELRNENFDKAVDIMA
KATQAPKRSNVDYFDESLSPQQRVHKSWKLWSFYVDLVESVSTLDETKKVYERIFELRIA
TPQTIVNYANLLEEHKYFEDCFKVYERGLDLFSYPVAFEIWNLYLTKAVDRKIGMERLRD
LFEQAVEDCPPKFAKVLYLMYGALEEDRGLARHAMRIYERATRAVADEDRLEMFNFYITK
SASNFGLTSTRPIYERAIAALPDAEAKEMCLKFAEMERRLGEIDRARAIYGHASQFCDPR
TSPEFWKRWESFEVQHGNEDTYKEMLRIKRSVQAQYNTDVNFIASQAVARGQQNGVPADE
DETTDAAGEDAMAALERQARAPAGFVAASTGPQGGNIKPTEEAAANPDAINLDDDL
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgcccggcgaactcctcaggaccgtgaccggtctctcacggcccaccaagcgcaagatg
gagccctcgagcgaccttttcctcatcaccgaccaggacgtcgcgtacgagcaggacatc
cagcgcaatcccggcagcgtcaagccctggctggactactacagcttcaaaaagtcgcgt
ggtagcatcttggagcaggcttttgtgctcgagcgcgcagtcaccaccctcccgcgctcc
tacaagctgtggaagctctacctcgagctccgcacaaagcacctgaccaagaagaatccc
gcaaagttcgcgccgcactatgtcaaagtcaatgctctcttcgaacgcgcccttgtgcta
ctcaacaaaatgccgcgcatctgggaaatgtatctcaacttcctcatgcagcagcccctc
gttaccacgacccgccgtactttcgaccgagcattacgcgcccttcctttgacccagcac
aaccgcatatgggcactataccgaccttttgccacgtctgcctcgggcgagacggctgtc
aagatatggcgccggtacatgcaaatccacccggaggatgccgaggacttcatcgaactg
ctcaaggatatgcgcaagtataccgaggctgtgaagaagtacatggaaattctcaataac
ccgcgcttcaagagcaaggaagcaaaaggcccctttcagttctggaccgagatgatcgac
ctcatcatcgaccatgccaaggaaattgacaccagcgacgacagcggcatcgacgtggag
aagatcatccaaagcggcatctcaaagtttcctgaccagcgtggcatactgtgggttggc
ctggcgcgatactggatgcacaagggcgaatatgagagagcacgagacgtcttcgaagag
gccgttaccactgtcatgactgtgcgcgacttctccgttgtattcgacacatatgtggaa
gccgaggaggccatgattggtatcaagctgaatgaagctgctgcccgctccgaaaagggc
aatatggacgagcctgccgacgcggaccttgacattagaatggtgcgcttcgaatcactc
atgcaaagaagaccattcttgctcaacgatgtcatgttacggcagaatccccataatgtc
atcgagtgggagaagcgcgttgcgttatggggcgacaacaagaaagaggtggtgcagacc
tacaccgatgccattgccgccatcaatccaaagaaggccatcggcaagttccatgagctc
tggaccaactacgccaaactctatgaagctggtggcgatcttcagaatgcccgtatcatc
atggaaaaggccgtcaaggtgcctttcaagtccgtctccgagctggccgagatgtggtgc
gaatgggcagaaatggagctgcgcaacgagaacttcgacaaagcggtggacatcatggcc
aaagctacgcaagcgcctaaacgatcaaatgtcgactattttgacgaatcactgtcgccg
cagcaacgcgttcacaagagctggaagctgtggagtttctacgtcgatctcgtggagagt
gtcagcactctggatgaaaccaagaaggtctatgaaagaattttcgagcttcgcattgcc
acgccgcaaaccattgtcaactatgcgaatctactagaagaacacaagtactttgaagac
tgctttaaggtctacgagcgtggtcttgacctattcagctaccctgtggcttttgagatc
tggaatttatacttaaccaaagccgttgaccgcaagatcggaatggaacgcttacgagac
ttgttcgaacaggccgtcgaagattgtccccccaaattcgccaaggtgttgtacctcatg
tatggtgcgctggaggaggaccgtgggcttgccaggcatgccatgcgcatctacgaacgt
gcaacacgagccgtggcggacgaagacagattggaaatgttcaacttttacatcacaaag
tcggcatcgaatttcggtcttacatctacacgacccatttacgagcgtgccattgctgcc
ttgcccgacgctgaagccaaagagatgtgcctcaagtttgctgagatggaaagacgtctg
ggagagatcgatcgggcacgagcaatctatggccatgccagtcaattttgcgacccaaga
acgagccccgagttctggaagcggtgggagtctttcgaagtccaacatggaaacgaagac
acctacaaagagatgctacgcatcaaacggagcgtccaggctcaatacaataccgacgtc
aacttcatcgcctctcaagcagtggctcgtggccaacagaacggcgtaccagccgacgaa
gacgagacaacagacgctgctggcgaggacgcaatggcagccctcgaacgtcaagctcgc
gctcctgcaggatttgtcgctgccagcactggtcctcaaggtggcaacattaagcccaca
gaagaggcagccgccaaccccgacgcgattaatctcgacgatgatctatga
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