Pyrenophora tritici-repentis: 6347351
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Entry
6347351 CDS
T10215
Symbol
PtrM4_035450
Name
(RefSeq) FIP1, Polyadenylation factor I complex, subunit FIP1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
6347351 (PtrM4_035450)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6347351 (PtrM4_035450)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
6347351 (PtrM4_035450)
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Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
6347351
NCBI-ProteinID:
XP_001939395
UniProt:
A0A2W1EW81
B2WGK7
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Position
1:<9151730..>9153096
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AA seq
318 aa
AA seq
DB search
MADESDDDLYGDETTTQEKKQIAKEEEASSGDEPMDEESGDEDDSDSDIDIIIEKAPAPA
KPTAPQQTQQESKAIKIEAPPPSTTPSQQQVPTRTVPTSGGTVPQLSATALSGTAFPAQR
TSTIDVNGNPIYPPQGKEILSIDIDANLAEEQKIWRRPGEDQSDYFNYGFDEFTWELYRQ
RQVNMANTLQGQKNDMAQMQAMMGGGPMPGMPAMGGGPQGNAGPGGAPPTGPGGGGGGGG
GMGGPGGMNEQQMQMMMQEMMAQGMDPSQMDFASFMQMAGQGMGGFPERIFASLFNATTV
PYMLLFFRPIRHIPISLA
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaatccgacgacgatctgtacggggatgagaccacgacacaggagaagaag
cagatagcgaaagaagaggaagcatccagcggtgacgaacctatggacgaagaatcaggc
gacgaggacgatagtgactctgatatcgacattatcattgaaaaggcacctgcacccgcc
aaacccacagctccccaacaaacgcaacaagaatccaaagccataaaaatcgaagcacca
cccccctccaccaccccctctcaacaacaagtccctacaagaaccgtacctaccagcggc
ggtaccgtgccccaactctccgccacggccctctcaggcaccgcattccctgcccaacgc
acctcaaccatcgacgtaaacggcaacccaatctaccccccacagggcaaagaaatcctc
tccatagacatcgatgcgaatctagccgaggagcagaagatctggcgtcgaccgggtgag
gaccagtctgattacttcaactacggcttcgacgagttcacatgggagctatacaggcaa
cgacaggtcaacatggcaaacacactgcaaggacagaagaacgacatggcacagatgcaa
gcgatgatgggtggaggaccaatgccaggtatgcctgccatgggcggcggacctcaggga
aacgctggaccgggtggtgcgccgcctactggacctggaggaggaggaggtggcggcggt
ggcatggggggccctggtggtatgaacgaacagcagatgcagatgatgatgcaggaaatg
atggcacagggcatggatcccagtcaaatggactttgcttctttcatgcaaatggcaggt
cagggcatgggcggcttccctgagcgtatctttgccagcctattcaatgctacaactgtt
ccatacatgctcctcttcttccgtccaatacggcacataccgatttctttggcgtag
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