Pyrenophora tritici-repentis: 6347831
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Entry
6347831 CDS
T10215
Symbol
PtrM4_127830
Name
(RefSeq) SrmB, Superfamily II DNA and RNA helicase
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03013
Nucleocytoplasmic transport
ptrr03015
mRNA surveillance pathway
ptrr03040
Spliceosome
Brite
Enzymes [BR:
ptrr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
6347831 (PtrM4_127830)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
6347831 (PtrM4_127830)
mRNA cycle factors
Stress granule specific factors
6347831 (PtrM4_127830)
Spliceosome [BR:
ptrr03041
]
Complex C
Other components
EJC/TREX
6347831 (PtrM4_127830)
Ribosome biogenesis [BR:
ptrr03009
]
Eukaryotic type
90S particles
Helicases
6347831 (PtrM4_127830)
Translation factors [BR:
ptrr03012
]
Eukaryotic type
Initiation factors
eIF-4
6347831 (PtrM4_127830)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
6347831
NCBI-ProteinID:
XP_001939873
UniProt:
B2WHT2
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All DBs
Position
7:complement(968465..969760)
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AA seq
399 aa
AA seq
DB search
MADGIDRNADDKMEFSTSKEVTVAPTFEAMHLKENLLRGIYAYGYESPSAVQSRAIVQVC
KGRDTIAQAQSGTGKTATFSISILQVIDTAVRETQALVLSPTRELATQIQSVIMGLGDYM
NVQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRVADMIRRRNLRTRNIKMLVLDEADELL
NRGFREQIYDVYRYLPPATQVVVVSATLPYDVLEMTTKFMTDPVRILVKRDELTLEGLKQ
YFIAIEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQ
RERDSIMQDFRQANSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGR
KGVAINFVTQDDVRILRDIELYYSTQIDEMPMNVADLLA
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggccgacggaatagacagaaatgccgacgataagatggagttctccacctccaaggag
gtcacggtagcgccgacgtttgaggcgatgcacctgaaggagaacctgctgcgcggcatc
tacgcctacggatacgagtcgccttcagcagtgcagtcacgtgctattgtacaggtctgc
aaaggtcgcgataccattgcacaggcgcagtcgggaacgggaaagacggcaactttctcc
atttccatcctccaggttatcgatacagcagtgcgcgagacacaggcacttgttctttcg
cctacccgcgaacttgcaacccaaatccagtcggtcatcatgggtctcggcgactatatg
aacgtacagtgccacgcctgcattggaggaacaaacgtgggcgaggatatccgcaaactc
gactatggtcagcacgtcgtctctggaacaccaggacgtgttgctgacatgattcgccgc
cgcaacctccgcacacgcaacatcaagatgctcgttctcgacgaagccgatgagctcctc
aaccgaggatttcgcgaacaaatctacgacgtttaccgctacctgccacccgccacacaa
gtcgttgtagtctccgccacactcccatacgatgtgcttgagatgacgaccaagttcatg
acggatcctgtgcgcattctcgttaagcgcgacgaactgacgctcgagggtctcaaacag
tacttcatcgccattgaaaaggaggagtggaagtttgacactctctgcgatctttacgac
acacttaccattacacaggccgtcatcttctgcaacacccgacgcaaggtggactggctg
accgacaagatgcgcgaggccaactttactgtatcctcaatgcacggagatatgcctcag
agggagcgagacagcattatgcaagacttccgccaggctaactcgcgcgtgctgatctcg
accgatgtgtgggctcgtggtatagacgttcaacaagtatcgctggtcatcaactatgat
cttccgtcgaaccgcgagaactacattcacaggattggtcgaagcggtcgattcggacgc
aagggtgtggccatcaactttgtcacccaggacgacgtgcgcattctccgcgacattgag
ctctactactctactcagatcgatgagatgcccatgaacgttgccgatctcctggcgtag
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