Pyrenophora tritici-repentis: 6348001
Help
Entry
6348001 CDS
T10215
Symbol
PtrM4_129980
Name
(RefSeq) CAF1 family ribonuclease
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
6348001 (PtrM4_129980)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6348001 (PtrM4_129980)
Enzymes [BR:
ptrr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
6348001 (PtrM4_129980)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
6348001 (PtrM4_129980)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
DEDDh_C
PUS7L_N
Motif
Other DBs
NCBI-GeneID:
6348001
NCBI-ProteinID:
XP_001940039
UniProt:
B2WI98
LinkDB
All DBs
Position
7:1551365..1553315
Genome browser
AA seq
634 aa
AA seq
DB search
MDVDAASFPHHLLGLMVNISEADFVSFDLELSGIPSRIQDKPARGSGRLTLEERYAETKM
GADRYQILQVGITCARFDYIADKYVLRPYNISISPLLDERLDFEREVRFQTGACTFLLNN
GFDLGAPFAKGVQYLSREEAERAKQMAWDRLDNKNPIPDLQLKEEDVESLDFMRRIREAI
KTWKTSKALHLDVTTHTGLPDKPAMPVITRFEKRLVHQLVRAEFPELVTIGRSECVRIVD
LDPVREADNMRRIKNRVRESIVRQTGFRWVFEALVKGGAVDRADLLYVARTTGMPMTADM
YAIRDRYDRAVERLKTKQPVLVGHNMFTDIVYLYRTFVGQLPDTLQGFQDAIHGLFPKII
DTKYLATHAEGDLNASPTLQDIAMRLNTQPLPHIITHADYPKYQDTEAFHEAGYDSLLTA
TIMIKLAAKLGAERGEEVPAPLSGIPLGKSKTSTPEPNPTISDEIKTPAEDSAEYIEDMV
KDGREKVQKPVPLPPVEKPKPAKANKRTQNKKGGKKNKETEQRRFETRNMFDSLREMTLN
PETGSSSNEDEPRHDSHIQDNQSATWDKQAEATGSWENDVHVQDKTGWVPVEQVKRQSGE
LIPAFNSKFWCEFGNTLRVFGTEEAVLKIADWED
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggacgtcgacgcggcttccttcccccaccacctgctgggtctcatggtaaatatctca
gaggccgacttcgtatcctttgatttggagctatcaggcatcccttcgcggatacaggac
aaacctgcacgtggctccggacgcttgaccttggaagagcgctatgccgagactaagatg
ggagcggaccgttaccagatcctacaagtaggcatcacgtgtgccagattcgactacatt
gccgacaaatatgttttgcggccttacaacatcagcatcagtccattactcgacgagcga
ctggacttcgagcgcgaagtcagatttcaaactggcgcctgcacatttctcctcaacaat
ggcttcgacttgggcgctcctttcgcaaagggcgtgcagtatctctcacgagaagaggcc
gagcgagcgaagcagatggcatgggatcgcctggacaacaagaaccccattcctgatctt
caactcaaggaggaggacgttgagtcgcttgactttatgcgccgtatcagggaggccatc
aagacgtggaagaccagtaaggctttgcatttggacgtgacaacccataccggccttcct
gataagcctgccatgcctgtcatcacccgattcgaaaaacgcctcgtacatcagcttgtc
cgcgccgaatttccagaattggtcaccataggccgctcagaatgtgttcgcattgtcgac
ttggatccggtgcgcgaggcagacaacatgcgcagaatcaagaaccgcgtcagggaatcc
atagttcgccaaacaggctttcgttgggtcttcgaggctcttgtcaagggtggtgctgtc
gatcgtgcagatctgctgtacgttgcacgcactacaggtatgccaatgacagccgacatg
tacgccatacgagacagatacgacagggctgtagagaggctcaagactaaacagcctgta
ctcgtcggtcacaacatgttcaccgacatcgtctatctataccgcacttttgttggacaa
ctaccagacacgctgcaaggcttccaggacgccatccatggactatttcccaagattata
gacacaaagtacctagctacgcatgctgaaggtgacctcaacgcctcgcctacgctacaa
gacatcgcaatgcgtctcaacactcagcctctgccacacatcatcactcacgccgactac
cccaagtaccaggatactgaagctttccacgaagccgggtacgatagcctcttgaccgct
acaatcatgatcaagctggcggctaaacttggtgctgaacgtggagaggaggtacccgcg
ccgttgtcgggtattcctctgggcaaatctaaaacttcaacgcccgaacccaacccgacc
atttcagacgaaatcaaaacgccagctgaagactctgcagaatacatcgaggacatggtg
aaggatggacgcgaaaaagtgcagaagccagtgccgctcccaccagtcgaaaaaccaaag
cctgcgaaagcgaacaagcgcacgcagaacaaaaaaggtggcaaaaagaacaaggaaaca
gagcaacgacggttcgaaacaagaaacatgttcgacagtcttcgagaaatgacgctgaac
cccgaaactggctcatcttccaacgaagacgagcctcgccatgacagccatatccaggac
aatcagtcagccacgtgggacaagcaggcagaagctaccggatcatgggaaaatgatgta
catgtccaggataagacaggctgggtgcctgtggaacaggtcaaacgacagtcgggggag
ctcattcccgccttcaactcaaaattttggtgcgaatttgggaataccctgcgtgtcttc
ggtacggaagaagctgtgctgaaaattgcggattgggaagattaa
DBGET
integrated database retrieval system
