Pyrenophora tritici-repentis: 6348359
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Entry
6348359 CDS
T10215
Symbol
PtrM4_083240
Name
(RefSeq) LSM1, Small nuclear ribonucleoprotein (snRNP) protein
KO
K11096
small nuclear ribonucleoprotein D2
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
6348359 (PtrM4_083240)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptrr03041
]
6348359 (PtrM4_083240)
03032 DNA replication proteins [BR:
ptrr03032
]
6348359 (PtrM4_083240)
Spliceosome [BR:
ptrr03041
]
Complex A
U1 snRNP components
Sm proteins
6348359 (PtrM4_083240)
U2 snRNP components
6348359 (PtrM4_083240)
Complex B
U1 snRNP components
6348359 (PtrM4_083240)
U4/U6.U5 tri-snRNP components
6348359 (PtrM4_083240)
Complex C
U2 snRNP components
6348359 (PtrM4_083240)
DNA replication proteins [BR:
ptrr03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
6348359 (PtrM4_083240)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
6348359
NCBI-ProteinID:
XP_001940392
LinkDB
All DBs
Position
3:<2516807..>2517313
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AA seq
117 aa
AA seq
DB search
MVDAKIQELLSKPRSELTEYEVAQVEEHELTTGPLSILQTAVRSRTQVLISCRNNRKILA
RVKAFDRHCNMVLENAKEMWTETPRLANGSYGRKVNKDRFISKLFLRGDSVILVLLS
NT seq
354 nt
NT seq
+upstream
nt +downstream
nt
atggtagacgcaaagattcaagagcttctttctaagccacgctccgagttgacagaatat
gaggttgctcaagtcgaagagcatgaactcaccaccggccccctctccatcctccaaacc
gccgtcagatcgcgcactcaggtgctgatctcctgcagaaacaacaggaagattcttgcg
cgcgtcaaggcttttgaccgtcactgcaacatggtacttgaaaatgcaaaggagatgtgg
actgagacaccacggttagccaacggtagttacgggcggaaggttaacaaggaccgcttc
atttccaagctgttcttgcgaggagactcggtcattctcgttttgttgtcatag
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