Pyrenophora tritici-repentis: 6348364
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Entry
6348364 CDS
T10215
Symbol
PtrM4_083190
Name
(RefSeq) RNA-binding protein (RRM domain)
KO
K13201
nucleolysin TIA-1/TIAR
Organism
ptrr Pyrenophora tritici-repentis
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6348364 (PtrM4_083190)
03041 Spliceosome [BR:
ptrr03041
]
6348364 (PtrM4_083190)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
6348364 (PtrM4_083190)
Spliceosome [BR:
ptrr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
6348364 (PtrM4_083190)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_5
RRM_7
RRM_10
RRM_PARP14_3
RBD_AKAP-17A
RRM_8
ZinT
Motif
Other DBs
NCBI-GeneID:
6348364
NCBI-ProteinID:
XP_065963506
LinkDB
All DBs
Position
3:complement(2503228..2504961)
Genome browser
AA seq
485 aa
AA seq
DB search
MADQQNPGAQLPPPPQAGAPGYENQGQPQQHMPPPPLAPVIIPQNNNPIPTAISSPMSGN
PMSPTSGQPGYVPRRAAPEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDKTA
SSPSFNSKGFNYGFVEYDDPGAAERGMATLNGRRIHNNEIRVNWAYQSNNTAKEDTSNHF
HIFVGDLSNEVNDEVLLQAFSTFGPVSEARVMWDMKTGRSRGYGFVAFRDRADADRALSS
MDGEWLGSRAIRCNWANQKGQPSISQQQAMASMGMTPTTPFGHHHFPTHGVQSYDMVVAQ
TPAWQTTCYVGNLTPYTSQSDLVPLFQNFGYVTETRFQSDRGFAFIKMDTHENAAMAICQ
LNGYNVNGRPLKCSWGKDRPPTGQFEGYSPAGGPNSAYPQTPSAYFPQYGGGPQGGPMSP
SGPSPGGQPFAQQQQAFGNPGMPYQQQMQQPGSAGGYGRGAPQQPQWGQSPQAAFSQNGF
GGYQG
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggccgaccaacagaaccccggggcacagctcccccctcctcctcaggctggcgcgccc
ggctacgaaaatcagggccagcctcagcagcacatgccgccgccgccgctcgcgcctgtc
atcattccgcagaacaacaaccccatccccacggccatcagctcgcccatgtcaggcaac
cccatgtccccgaccagcggccagcccggctacgtccctcgtcgcgctgcccccgagccg
aacaagcgcgcgctatacgttggtggactggaccccagagttaccgaggacgttcttcgt
cagattttcgagacgactggccatgtccagagcgtcaagatcattccagacaagactgca
agttctccttctttcaactccaagggcttcaactacggtttcgtcgagtatgacgacccg
ggcgcggccgagcgtggcatggccaccctcaatggccgtcgcattcacaacaatgaaatt
cgcgtaaactgggcttaccaatctaacaacacagccaaggaagacacgtctaaccacttc
cacatcttcgttggtgatctgtccaacgaggtcaatgatgaggttctactccaggctttc
tccacctttggacccgtctctgaagcccgcgtcatgtgggacatgaagacgggtagatcg
cgcggctatggcttcgtcgcttttagggatcgcgccgatgctgatcgtgctctcagctcc
atggacggagagtggcttggttcccgcgccatccgctgcaactgggccaaccagaagggt
cagccatccatctcgcagcaacaggccatggcctcaatgggcatgacgccaaccactccc
tttggacaccatcacttccccacccatggcgtccagagctacgacatggttgtcgcccag
actcccgcctggcaaactacgtgctacgtcggcaacctcaccccttacacctcacagtcc
gatctagtccctctcttccagaactttggttatgtcactgagacgcgcttccagtcggat
cgtgggtttgccttcatcaagatggacacgcatgagaatgccgccatggccatctgccag
ctgaacggctacaacgtcaatggccgtcctctgaagtgcagctggggcaaagaccgtcct
ccgactggccagtttgagggctactcgcccgctggcggtcccaactcagcttaccctcaa
acgcccagcgcgtactttcctcagtatggtggtgggccacaaggtggtcccatgtcaccc
tcaggacctagccccggcggacaacctttcgcgcagcagcagcaggcctttggcaacccc
ggcatgccctaccagcagcagatgcagcaaccgggcagcgctggtggctatggtcgtggt
gctcctcagcagccgcagtggggtcaatctcctcaagccgccttcagccagaacggcttc
ggcggataccagggctaa
DBGET
integrated database retrieval system
