Pyrenophora tritici-repentis: 6348472
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Entry
6348472 CDS
T10215
Symbol
PtrM4_074960
Name
(RefSeq) YSH1, exonuclease beta-lactamase fold involved in RNA processing
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
6348472 (PtrM4_074960)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptrr03021
]
6348472 (PtrM4_074960)
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6348472 (PtrM4_074960)
Transcription machinery [BR:
ptrr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
6348472 (PtrM4_074960)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
6348472 (PtrM4_074960)
U7-dependent histone pre-mRNA processing factors
6348472 (PtrM4_074960)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
Anti-Pycsar_Apyc1
RMMBL
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
6348472
NCBI-ProteinID:
XP_001940503
LinkDB
All DBs
Position
3:<287964..>290446
Genome browser
AA seq
708 aa
AA seq
DB search
MAAKRKAASMAPEDDDPIDPSDELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAHE
GLSAMPFYDDFDLSTVDVLLISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQ
DSVRVGNMSSNSETKIQMYTEADHLNTYPMIESIDFYTTHTVAGVRITPYPAGHVLGAAM
FLMEIAGLKILFTGDYSREDDRHLVSASVPAGVKVDVLITESTFGISMHTPRVEREAQLM
KAITDVLNRGGRALLPVFALGRAQELLLILDEYWSKHPEVQKIPIYYNSSLARKCMQVYQ
TYVSAMNDNIKRLFAERMAEAEAAGDTGRRGAWDFKFVRSLKSLERFDDLGGCVMLASPG
MMQSGTSRELLERWAPDPRNGVIITGYSVEGTMAKQIVHEPDQIPAIMTRASNTARRPGQ
RENEQTMIPRRCTVQEYSFAAHVDGKENMEFVQEVAAPVVILVHGEKGNMTRLKSKLLSF
NAQKAIPTKIYSPANCEELRIPFKTDKIAKVVGKLASIAPPLPRSLTPGGSEIDQKGGKG
DESERVDLISGVLIQNDFKISLMAPEDLKEYAGLTTTTILCRQHLTLSAAGIDLIRWALE
GTFGAIKESSLTDAAVNGKMNGAENGHKEEEADEEVNRTQTKFTIMDCVSVLVKNGGRVE
VEWEGNVINDGIADAVLAVLFTVESSPAAVRRKYPELRAYITPSQRKT
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggcggcaaagaggaaggcagcgtccatggcgcccgaggacgacgaccccatagatcca
tctgatgagctcatgtttctttgccttggcggtggtaacgaagtcggccgctcatgtcac
atcatccagtacaagggcaagacggtcatgctcgatgccggtatgcatcctgcgcacgaa
ggcttgtccgccatgcccttttacgacgacttcgatctcagcactgtagatgtgctacta
atatcacattttcacgtcgaccatgccgcttctctgccctacgtgcttgctaagacgaac
ttcaagggccgcgtcttcatgacacatcccaccaaggccatctacaagtggcttatccaa
gactctgtccgcgtgggcaacatgtcaagcaattccgagaccaagatacaaatgtacact
gaagccgaccatctcaacacctacccgatgattgagtccatcgacttttatactacacac
actgtagctggtgtccggattacaccatatcccgcaggccacgtattaggagcagccatg
ttcctgatggagattgcaggtctgaagatattgttcactggagactactcgcgagaggat
gaccgacatttggtatcggcctctgtaccagctggcgtcaaggttgatgtgctcatcacc
gagtcaacctttggtatttcaatgcacacgccgcgtgttgagcgagaagcacagcttatg
aaggcaatcaccgacgttctcaaccgcggtggccgagctcttctcccagttttcgctcta
ggccgagctcaagagctgttgcttatcctggatgaatattggagcaagcatccagaggtc
caaaagatacccatctactacaactccagcttagcccggaagtgtatgcaagtctaccaa
acctacgtctccgccatgaacgacaacatcaagcgtctgttcgctgagcggatggctgaa
gcggaggctgcaggagacactggacgacgtggagcttgggactttaagtttgtgaggtca
ctcaagagtcttgaacgttttgatgacttgggaggttgtgtcatgcttgcttcgcctggt
atgatgcaatctggtacttctcgtgagctgcttgagagatgggcacccgatccaaggaac
ggtgtcatcattaccggttattccgtcgaaggcacaatggcgaagcaaatcgttcacgag
ccagatcaaattcctgcaattatgacgcgagccagcaacacagcacgacgtccaggtcag
cgagaaaacgaacaaaccatgataccccgtcgatgcacagtccaagaatacagctttgca
gctcacgttgacggaaaggaaaatatggagtttgtgcaagaggtagcagcaccagttgtc
atccttgttcatggtgagaaaggtaacatgacgcgtctcaaatccaaacttctctctttc
aacgctcaaaaggccattcccacaaagatctactcccctgcaaactgcgaagagctccgc
atccccttcaagaccgataagatcgccaaggtagtgggaaaactagcctccatcgcaccg
cctttaccacgctccctgactcccggtggcagtgaaatagaccaaaagggaggcaaggga
gacgaaagtgagagggtagatttgattagcggagtgttgatccagaacgacttcaagatc
agtctgatggcgccagaagatctgaaagaatacgctggcttgaccacaacaaccattctc
tgcaggcaacatctcaccctcagtgccgcaggcatcgacctgatacgatgggcgctcgag
ggcacattcggcgccatcaaagagtccagtctcaccgacgccgcagtcaacggcaagatg
aacggcgcggaaaacggccacaaggaagaagaagccgacgaagaagtcaacagaacacaa
accaaattcacaatcatggactgcgtcagcgtcttggtgaaaaacggcggccgcgtagaa
gtcgagtgggagggaaatgtcatcaacgatggaatcgcagatgccgttctcgccgtcttg
tttactgttgaatcttctcctgcggccgtacgacgtaagtaccccgaactccgtgcctac
ataaccccctcccaaagaaagacatga
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