Pyrenophora tritici-repentis: 6348486
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Entry
6348486 CDS
T10215
Symbol
PtrM4_075110
Name
(RefSeq) SFT1, Pre cleavage and polyadenylation specificity factor
KO
K12830
splicing factor 3B subunit 3
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
6348486 (PtrM4_075110)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptrr03021
]
6348486 (PtrM4_075110)
03041 Spliceosome [BR:
ptrr03041
]
6348486 (PtrM4_075110)
03036 Chromosome and associated proteins [BR:
ptrr03036
]
6348486 (PtrM4_075110)
Transcription machinery [BR:
ptrr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
6348486 (PtrM4_075110)
Spliceosome [BR:
ptrr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
6348486 (PtrM4_075110)
Complex B
6348486 (PtrM4_075110)
Complex C
U2 SnRNP specific factors
6348486 (PtrM4_075110)
Chromosome and associated proteins [BR:
ptrr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
6348486 (PtrM4_075110)
TFTC complex
6348486 (PtrM4_075110)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
6348486
NCBI-ProteinID:
XP_001940517
UniProt:
B2WJZ6
LinkDB
All DBs
Position
3:complement(321897..325940)
Genome browser
AA seq
1247 aa
AA seq
DB search
MSLYALTVKQPTATQDAISGDFLGTGKQQILTASGSRLAILEVSRRQKGFQELYSQDVFG
IIRGIAKFRIAGGTKDHIVITTDSGRLVTYEYLPDEKTFKTVHFETFGKSGIRRVVPGEY
LAADPKGRAIMIASTEKNKLVYILTRSGQTDIAISSPLEAHKPQTLVYCLIGLDVGYDNP
MFATLEVDYSSSETDPTGEAYDEIKKELVYYELDLGLNHIVRKWSEPVDRTANTLFRVPG
GPNAPSGVLCCGEDSITYRRIFNNKSNVHRLAIPRREGATEDPNRKRMIIAGTLYSLKGG
DFFYLLQTEDGDVFKLTVDAPSGTVEKIKIKYFDTIPIVTSICILRAGFVYAACESGDRI
LYELESLGDETDDPVFESDQFPVDPDTSFAPPFFKPRALVNFTPVESMPSLNPIMGMEVA
NPALEDAPQVYTINGTSGRSSFRTTRNALEVLDLIESPLPQNASDVWTTKLTSGDEADTL
IVLCLHSRTLVLKIGDDVEEASNTGFLPDTNTLGVQQFGEDCIIQIHPKGIRHIQGIQFP
NDDADATHANLMDWHPPAHRTIVACATNNRQVAIALSSGQILYFECDSDGSLAMAEEEIS
LDSTINCLAMPDVPEGSVRAFFLAVGCSDQTVRIFNLSPDMDGNILRSISVQALTSPPSD
LTINFMKDRSPRGESQFLHIGLRSGVYIRSVLDEMTGDIGDTRRRFLGPEPIKFAKVNDV
AGSPGILAMTSRPWLGYTHPRTGVLQLTPLNYIPFKSAWNFDGSQFKGIICVSTNELRIF
TFNDLTDNTTYENISLKYTPRKMVGYHEQGVFYVIQSDNNTISADRRQQLIAQGNTKEDS
NVEQENDTNGGMELVETNGDAADGSTESEEFPAIDFGYPRAEGSWASCIQVVDPVTEKAV
VHTVEINGNQSLVSAALVFFESRGNEAFLAVGLAKDLSFQPFKFSSASIQVYKISPDGRE
IELFNETAVSEPPLALLAFKGKLIAGVGRHLCLYDCGMKSLLRKAQAPNSVPTRIVDIKT
QGSRLVVSDQAQSVTYFVHKDQVHPNRLIPFVDDSVARHTSASEMLDYDTTIGGDKFGNI
WLVRCPKEISESSDESPDGSDLLVDKSYLGGTPNRLDLIAHYFTNDIPVSIQKANLISGG
DKVIFWAGLQGTLGALIPFTSRRTHKLFQQLELTLRSEDKPLSGRDHLTYRSYYAPVKSV
IDGDLIERYLVLSSDKRESIAGQMTGSEWTPSSIDEQIWGMRSLFAF
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgtccctctacgccttgacggtgaaacagcccacggcgactcaggatgccatctcgggt
gattttctgggaaccggcaagcagcagatcctcacagcgagtgggtcgcggttggctata
ctagaggtctcgcggaggcagaaaggcttccaagagctctattctcaggatgtatttggc
attattcgcggcatcgccaagttcaggattgccggcggtaccaaggaccacattgtcata
accacagactccggaagactggtcacgtacgagtaccttccagatgagaaaaccttcaag
acggtccattttgagacgttcggcaagtctggaatacgtcgtgtcgtcccgggcgagtat
ctggcagctgacccgaaagggcgcgctatcatgattgcttcgacggagaagaacaagctc
gtctacatccttactcgaagtggccagacggacattgccatctcctcaccgcttgaagca
cacaagccccagacactcgtttactgtctcatcggacttgatgttggctatgacaaccca
atgtttgctacactggaagtcgattactcgagttcggaaaccgaccccactggcgaggcg
tacgacgagatcaagaaggagctggtatactacgagctggaccttggtctcaatcacatt
gtacggaaatggtcagagccagttgatcgcacagccaataccctcttccgcgttccagga
ggccccaacgcaccgagtggtgtattgtgttgtggagaagacagcataacataccgtcgc
atcttcaacaacaagtccaatgtccaccgattggcgattccacgacgtgagggagccacc
gaggacccaaatcgaaagcgtatgatcatcgctggtaccctatactctctcaagggtggt
gacttcttctacctcttgcagacagaggacggcgatgtcttcaagcttaccgtcgatgcc
cctagtggtacagttgagaagatcaagatcaagtactttgataccatacctattgtcaca
agtatctgcattctcagagcaggtttcgtctatgccgcctgcgagtcgggggaccgcatc
ttgtacgagcttgaatctctgggtgacgagacggacgatccggtctttgagagtgaccag
ttccccgtggacccggatacctcttttgcgcctccattcttcaagcctcgagccttggtc
aatttcacaccagtcgagtcgatgcccagtctcaacccaatcatgggtatggaagttgcc
aaccccgcattagaggacgcgccacaggtgtacaccatcaacggcaccagcggtcggagc
tccttccgtaccaccagaaatgctctggaagttctggatctcatcgagtcgcctctgcca
cagaatgcttccgatgtgtggactacgaagcttacgagtggggacgaggcagacacctta
attgtgctctgtcttcatagtcgaacactcgtgttgaagattggcgatgatgtggaggaa
gcctctaataccggctttctcccagacacgaacacgcttggtgtgcaacaattcggcgaa
gattgtatcatccagatccatcccaagggcattcgtcacattcagggaattcaatttcct
aacgatgatgctgacgcaacgcatgccaatctcatggactggcaccctccagcgcaccga
accatcgttgcctgtgctacgaataaccgtcaagtcgcaattgctctcagttctggtcaa
attctgtattttgaatgtgactccgatggttcgcttgccatggccgaggaagaaatttct
ctggatagcacaatcaactgtctggcaatgcccgatgttcctgaaggcagtgtacgagct
ttcttcttggcagtcggatgcagtgaccagactgtcaggatattcaatctcagtcctgat
atggacggtaacattctccggagtatctctgttcaggctcttacatcaccgcccagcgac
ctcaccatcaatttcatgaaggataggtcgccgcgcggcgaaagccaattccttcacatc
ggtctgcgaagtggtgtgtacattcgctcagtactagacgagatgaccggtgatattggc
gacactcgaagacgtttcctaggacccgagcctatcaagtttgcaaaggtgaacgacgtt
gcaggctcgcctggtatcctagcaatgacttccaggccatggctaggctacacccaccct
cgcacaggagtcctacagctgacaccgctgaactacattcccttcaagtctgcgtggaac
tttgatggttcccaattcaaggggatcatttgtgtgagcactaatgagttacgaatcttc
accttcaatgacctcacggacaatacgacttatgaaaacatatcgctcaagtacacgcca
aggaagatggtaggctaccacgaacagggtgtcttctacgtcatccagagcgacaacaac
actattagtgcagacagacgccagcagctgattgcgcaaggcaacacaaaggaggacagc
aacgttgagcaagagaatgataccaacggcggtatggaacttgttgagaccaacggcgac
gcggccgacggaagcaccgaaagcgaggaatttcctgcgatcgactttggctaccctagg
gctgaaggcagttgggcatcttgtatccaggtagtcgaccctgtgaccgagaaggctgtc
gttcacacagtggagatcaatggcaaccagtcactcgtcagtgctgcgctggtcttcttt
gagagccgtggtaatgaggcattcctggcagtcggacttgccaaggacctgagctttcaa
cctttcaagttctctagtgcatcgatacaggtgtacaagatcagcccagatggacgcgag
attgagctcttcaatgagacagcagtcagcgaaccaccactagcgcttcttgccttcaag
ggtaagcttattgctggtgtgggtcggcatctgtgtctctatgactgcggtatgaagtca
ttgcttcgaaaggctcaagcaccaaactctgttcccacgcgcattgtcgatatcaaaacc
cagggcagtcgacttgttgtttctgatcaggcgcaatctgtcacgtattttgtgcacaag
gaccaggttcacccaaaccgtctcattccctttgtcgacgatagtgtcgctcggcataca
agcgcgtctgagatgctggactacgacaccaccatcggcggtgacaagtttggtaacatt
tggctagtgcgctgtcccaaagagatttctgaatcctcagatgaatcgccagatggttca
gatcttctcgtagacaagagctacctaggcggaactccaaaccgactcgatctgattgca
cactacttcaccaacgatatccctgtttccatacagaaggccaacctcatatcgggtgga
gacaaggtcatcttctgggctggcttacagggtacattgggagcactcattcccttcacc
tctcgccgaacccataagcttttccagcagctagaactcaccctccggtcagaagacaag
ccactctctggtcgcgatcatctcacttaccgcagctactacgcccctgtcaagagcgtc
attgatggtgacctcatcgaacgctacttggtgctatcgagtgataagagggaaagcatt
gctggtcagatgacaggttccgagtggacccccagcagcattgacgagcagatctggggc
atgagaagtcttttcgctttctag
DBGET
integrated database retrieval system
