Pyrenophora tritici-repentis: 6348601
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Entry
6348601 CDS
T10215
Symbol
PtrM4_076280
Name
(RefSeq) Rph, RNase PH
KO
K11600
exosome complex component RRP41
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
6348601 (PtrM4_076280)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6348601 (PtrM4_076280)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
6348601 (PtrM4_076280)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
6348601 (PtrM4_076280)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
6348601
NCBI-ProteinID:
XP_001940632
UniProt:
B2WKB1
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Position
3:complement(629719..630471)
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AA seq
250 aa
AA seq
DB search
MPLDTSTYSLALLRLDGRRWNELRRIHAQISTQAAADGSSYLEQGNTKILVSVTGPHEGR
QSGQRGGADKQAKVEVEINFAGFSGVERRKRKSDKRTSEMEHCIRSAFEGVLLLHLYPHS
TITLNIHIVSQDGSLLAACINASTLALIDAGIPMTDYLVACTAASSASASAADNASADDP
LLDLNNQEELELPFLTVGTLGESDKVAVCLMESRVRMERLESMLAVGIEGCKRMRNILDG
VVKGYGKRFG
NT seq
753 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcgacaccagcacctactcattggccctcttgcgcctcgacggccgacgatgg
aacgaactgcgcaggattcacgcccaaatctcgacccaagccgctgcagatggatcttcc
tacctcgaacagggcaacaccaagatcctcgtatccgtcacgggaccccatgaaggccgc
caatccggacagcgaggcggcgcggacaagcaagccaaagtcgaagtagagatcaatttc
gccggcttcagtggggtagagcgacggaagcgcaagagcgataagcggacaagcgaaatg
gagcattgcatacgatcggcgttcgagggcgtgctattactgcatctttacccgcactca
acaattactctcaacattcacattgtctcgcaggatgggtcgttactggcggcgtgcatc
aacgcctcgacgcttgcgcttattgatgctggcatacccatgaccgactaccttgtcgcc
tgtaccgctgcttcttctgcatctgcctctgctgccgacaacgcgtccgccgacgatccg
ctactagacctcaacaaccaagaggagctcgagcttcctttcttgaccgtcggcacgctc
ggagagagcgataaagtagctgtgtgtctgatggagagtagagtaaggatggaaaggtta
gaaagcatgttggccgtgggcattgagggttgcaagaggatgcgtaacatactggacggc
gttgtgaagggctatggcaagagatttggatga
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