Pyrenophora tritici-repentis: 6348706
Help
Entry
6348706 CDS
T10215
Symbol
PtrM4_077490
Name
(RefSeq) LSM1, Small nuclear ribonucleoprotein (snRNP) protein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03018
RNA degradation
ptrr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
6348706 (PtrM4_077490)
09123 Folding, sorting and degradation
03018 RNA degradation
6348706 (PtrM4_077490)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6348706 (PtrM4_077490)
03041 Spliceosome [BR:
ptrr03041
]
6348706 (PtrM4_077490)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
6348706 (PtrM4_077490)
mRNA degradation factors
5'-3' decay
Lsm complex
6348706 (PtrM4_077490)
Spliceosome [BR:
ptrr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
6348706 (PtrM4_077490)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
6348706
NCBI-ProteinID:
XP_001940735
LinkDB
All DBs
Position
3:complement(<973256..>973761)
Genome browser
AA seq
131 aa
AA seq
DB search
MSERGAFRGRGGGRGSDRGGRGGGRGGAQGGGAGGQSERPKKENILDLSKYMDKQITVKF
SGGREVIGTLKGYDQLMNLVLDEVKEALTDDEGNIRYRKLGLIVARGTLLVVISPVDGSE
EIPNPFMQEEE
NT seq
396 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagcgaggcgcattccggggccgtggcggaggtcgaggaagcgatcgtggagga
aggggcggtggtcgcggcggtgcccagggtggaggggcaggcggacagagcgaacgaccc
aagaaggaaaacatcctcgacttgagcaagtacatggacaagcaaatcaccgtcaagttc
agtggcgggagagaagttattggtactctcaagggctacgatcagctcatgaacttggtc
ttggatgaggtcaaggaagcattgacagacgacgaaggcaacattcggtatcgaaaactt
ggcctgattgtcgcacgcggcaccctcctcgtcgtcatttcgcccgtcgacggaagcgaa
gagatcccaaaccccttcatgcaggaggaagaatga
DBGET
integrated database retrieval system
