Pyrenophora tritici-repentis: 6349178
Help
Entry
6349178 CDS
T10215
Symbol
PtrM4_131460
Name
(RefSeq) XRN1, 5'-3' exonuclease
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03008
Ribosome biogenesis in eukaryotes
ptrr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
6349178 (PtrM4_131460)
09123 Folding, sorting and degradation
03018 RNA degradation
6349178 (PtrM4_131460)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6349178 (PtrM4_131460)
03009 Ribosome biogenesis [BR:
ptrr03009
]
6349178 (PtrM4_131460)
03016 Transfer RNA biogenesis [BR:
ptrr03016
]
6349178 (PtrM4_131460)
03036 Chromosome and associated proteins [BR:
ptrr03036
]
6349178 (PtrM4_131460)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
6349178 (PtrM4_131460)
mRNA degradation factors
5'-3' decay
5' exonucleases
6349178 (PtrM4_131460)
Ribosome biogenesis [BR:
ptrr03009
]
Eukaryotic type
Pre-60S particles
RNases
6349178 (PtrM4_131460)
Transfer RNA biogenesis [BR:
ptrr03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
6349178 (PtrM4_131460)
Chromosome and associated proteins [BR:
ptrr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
6349178 (PtrM4_131460)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN1_D2_D3
XRN_N
XRN1_D1
SH3_12
Paratox
R3H
Motif
Other DBs
NCBI-GeneID:
6349178
NCBI-ProteinID:
XP_001941197
UniProt:
A0A834RR11
B2WLK6
LinkDB
All DBs
Position
7:1939365..1943942
Genome browser
AA seq
1371 aa
AA seq
DB search
MGLDMNGIIHNCTHNDSDSVTARKSEDQMFISIFNYIEHLFGKIKPKQLFFMAIDGVAPR
AKMNQQRARRFRTALDTEKAREKAIREGVEMPTEEAFDSNCITPGTAFMAKLTQQLKYFI
NKKVSEDIDWQGVEVVLSGHEVPGEGEHKVMEYIRQAKAQPGYDPNRRHCLYGLDADLIM
LGLLSHDPHFSLLREEVTFGRQSQTKSKELEHQNFYLMHLCIVREYLELEFQELEEPGAL
SFPFDMERVIDDFILMAFFVGNDFLPNLPHLHINEGALALMFNVYKTVLPKGKGYINEEG
VINMERLAILLDELANIEYRHFESENSDAAWFKGKSLGKEDVMKKTARRGTVVMTTQQQA
LFAQVKSWLNDYLGKKEQGPLDFPVSLRAEDRKFVQELAEKLRLPWKTVQNEDGDRHIQV
TAPPKLVEGDSDEEEDTDDESKKAIARIVQKYEQAKVVDVSPEDAQSEMQKKYDEKFEAW
KNDYYKSKFEWDRSNEEELRKLTENYVQGLQWVLYYYYRGVASWPWYYQYHYSPMISDVK
RGLKADINFKLGQPFKPFQQLMGVLPDRSKSIVPKAYWPLMTNEDSPIIDFYPRDFTLDM
NGKKQDWEAVVKIPFIQEDRLLKAMATKEQDLTPDEKARNSFGVSLKFTYAKDLDFIYQS
SLPGVFPDLPHCKCIENIFDLPTMDGLEYYIGLMDGVKLGADALAGFPSLKVLPFHGKLE
FAGVNVFNQDSRNESMVITLLDTEPRQPVSHAIGKLGKAVHVGYPFLHEAKVVKVSDELF
DYVLPEDGVSAPVSIPHGPQEISNWKKTANRIESQYSKRLGINIGEIESLVHVEMLKGLR
KTDEGATIKEYGEVAGLQVEYATQSVVDEVVSADQRFLEKAALPIEEEFPEGARAFYLGD
YAYGRPLQVMGHADNKATIMVAKLKKPEPNFGREVVSMAERSTPYVPSYVVARQLNMPPL
ALSKLTSSFNVTSSGLKLNLGLNLKFEAKKLKVLGYSRKSPNGWEYSQKAMDLLAQYMIK
FPEFVAAIINNPTGDGWEDTDFYPAEIAKQKVKEIGAWLKEVQTKSFEKVPLDAEQLDSD
TVKLIEQAADANFHLTQEVEPKTVSKVPRVALLKPSDAEQRLGHQNFSIGDRIVYVQDSG
RVPIGSSGTVVGKTRTARVLLLDVVFDATFMSGTSLGDRCSPFRGSTVPATAVLNMTDQQ
VVHYSSAAAARRAQQPPQSSYTIPRFGAPGGPQLVPAGTPPPLHGSYRGAFGGANGRGGG
MAPRQAPQGQQTLPIHGGPPRGGRGGFAPRGGQANGHQNQAPNGANPRGTLRGGSNDFVP
RGRGGGFKGRGGFTVIDNTDPTEGVVPNNPNFQPRNYSNVICSYDNTTILS
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atgggtttggacatgaacggtattatccacaactgcacccataacgactccgatagcgtc
acggcccgcaagtcggaggaccagatgtttatttccatcttcaactacattgagcatttg
tttggcaagatcaagcccaaacagctcttcttcatggccatcgatggtgtcgccccgcgc
gccaagatgaaccagcagcgtgcgcgacgtttccgaactgctctcgatactgaaaaggct
cgggagaaggctatccgcgaaggcgtcgagatgcccaccgaggaagcttttgacagcaac
tgcatcacaccgggcacagcctttatggcgaagctcacacagcagctcaagtacttcatc
aacaagaaggtctccgaggacattgattggcagggtgtggaagtcgtcctgtcaggacac
gaggtccccggagagggcgagcacaaggtaatggagtacatccgtcaggcgaaggcgcag
ccggggtacgacccgaaccgtcgccactgcttgtacggccttgatgccgacctgatcatg
ttgggtttgctcagccatgacccccacttcagtttgttgcgagaagaggtgacatttggc
cgccagagccagaccaagtccaaagagttggagcatcagaacttctatctcatgcatctc
tgcattgttcgagaatatctggaactcgagttccaagaactggaagagcctggcgctctt
agctttccatttgatatggagcgtgtcattgacgatttcattctcatggctttctttgtt
ggtaacgatttccttccaaaccttccgcatttgcatattaacgagggcgcgttggctctc
atgttcaacgtctacaagacagttctacccaagggtaaaggctacatcaacgaggagggt
gtcatcaacatggagcgtttggcgatattattggatgaactcgcaaatatcgaataccgc
cattttgaatccgaaaactcagacgccgcctggttcaagggaaagagccttggaaaagaa
gatgtaatgaagaagacggcgagacgaggcacagttgttatgaccactcaacagcaggct
ctgttcgcacaggtcaagagctggctgaatgactacttggggaagaaagagcagggtcct
cttgattttcccgtctctctccgagcagaggaccggaagtttgtccaggaacttgccgaa
aagctgcgtcttccatggaagactgttcagaatgaagatggcgatcgtcatatccaggtc
acggctccgcccaagctggtggagggtgactcagatgaggaggaggacacagacgacgag
tccaagaaagcgattgcacgcattgtacagaaatacgaacaggccaaggttgttgatgtc
tcacctgaggacgctcaatcggaaatgcagaagaagtacgatgaaaagtttgaagcttgg
aagaacgactactacaagagcaagttcgagtgggatcgcagcaacgaagaggagctccgc
aagctaactgagaactatgtgcaaggactacaatgggttctctattactactaccgtgga
gtagcgtcgtggccgtggtactaccaatatcactactcgcccatgatctccgacgttaag
cggggtttgaaggcagacatcaacttcaaactgggccaaccattcaagcctttccagcag
ttgatgggagtcttgcctgatcgcagtaagagcattgtaccgaaagcttactggcctctt
atgacgaacgaggactcgcccatcatcgacttctatccccgtgacttcacgttggacatg
aacggaaagaagcaggattgggaggcggtcgtcaagattccctttattcaggaagaccgt
ttgttgaaggccatggctacgaaggaacaagatctaacaccagatgagaaggcccgcaac
tcattcggagtctcgctgaagttcacctacgccaaggatctcgacttcatctaccaatca
tccctgcctggtgtgttcccggatctaccacattgcaagtgcatcgaaaacatcttcgac
cttcctactatggacggactggagtactacattggtcttatggacggcgtcaaactggga
gcagatgcattggcaggcttccccagcttgaaagttttgccgttccatggaaagctcgag
tttgctggcgtcaacgtgttcaatcaagatagtcggaacgagagcatggttattacgctt
ctggataccgagccgcgacagccagtatcgcatgcaataggaaaacttggaaaagcggtt
catgttggctacccattcctccacgaggcaaaggtagtcaaggtatcggacgagttattc
gactatgtccttcctgaggatggtgtatctgcgcctgtttctattccccatggcccacag
gaaatctcgaactggaagaagacggcgaaccgcatcgagagccagtacagcaagcgcctt
ggtatcaacattggcgaaatcgagtcacttgtacatgtggaaatgctcaaaggtcttagg
aagactgatgaaggcgccacaatcaaggagtatggtgaggttgctgggctgcaggtcgag
tatgcaacccaatcagtcgtcgatgaggttgtcagcgcagaccaacgcttcctggagaag
gcggcattgcctatcgaggaagaatttcctgaaggtgctcgagctttctatcttggagac
tacgcctacggtcgccctctgcaggttatgggccacgcagacaacaaggctactatcatg
gtcgccaagcttaagaaacccgagccaaacttcggacgtgaggttgtcagcatggccgaa
aggtcgacaccttatgtaccatcatatgttgttgctaggcagctgaacatgccgccccta
gccttgtccaagctcacttcttccttcaacgtcacctccagcggtctcaagctcaatcta
ggcttgaacctcaagtttgaggcgaagaagctcaaggttctgggttactctcgaaagtcg
cccaacggatgggaatacagtcagaaggccatggacctcctggcccagtacatgatcaag
ttccctgagttcgttgctgccatcatcaacaacccgacaggcgatggctgggaagacact
gacttctaccccgccgagattgcgaaacaaaaggtcaaggaaattggagcctggctgaaa
gaggtccagaccaagagctttgagaaagtacctttggacgccgagcagctcgactctgac
acagtcaagctgattgaacaggcggcggatgcaaacttccatctcactcaggaggtggag
cccaagactgtctcaaaggtgccgcgtgtggctttgctcaagccttcagatgcagagcag
cgcctaggacaccagaacttcagcattggcgaccgtattgtctacgtccaggactctgga
agggtacccattggatcatcgggtactgtggtcggaaagacacgcacagcacgtgtcctg
ttgctggatgttgtttttgatgcgactttcatgagcggtacttctcttggtgatcgctgc
tctccgtttagaggatctactgtgccggcaactgctgttctcaacatgacggatcagcaa
gtcgtccactactctagcgctgctgctgccaggcgcgcgcaacaacctccccagtcatca
tacaccataccccgctttggtgctcccggaggtcctcaactggttcctgcaggtacgcca
ccccctctgcatggctcataccgtggagctttcggcggtgccaacggacgtggtggaggt
atggctccacgccaggctccacaaggacaacagacgctaccaatccatgggggcccacct
cgcggcggtcggggcggtttcgctccccgcggaggtcaagccaacggccatcaaaatcag
gctcccaatggggctaaccctcgtggtactctccgtggcggctccaatgactttgtaccg
cgcggacgaggaggtggcttcaaaggccgaggtggcttcaccgtcatcgacaacaccgat
cctactgagggtgtcgtccccaacaaccccaacttccagccacgcaactattcaaacgtt
atctgtagctacgataatacaactatcctctcataa
DBGET
integrated database retrieval system
