Pyrenophora tritici-repentis: 6349347
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Entry
6349347 CDS
T10215
Symbol
PtrM4_133340
Name
(RefSeq) NUDIX-2 domain containing protein
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
6349347 (PtrM4_133340)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6349347 (PtrM4_133340)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
6349347 (PtrM4_133340)
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SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
Motif
Other DBs
NCBI-GeneID:
6349347
NCBI-ProteinID:
XP_065961114
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Position
7:<2439646..>2440618
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AA seq
275 aa
AA seq
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MSTIVKEASQSSYPPVIPKDFNGNQPKTIRLFPLSNYTFGTKDGQPEEDPSVLARLKRLE
EHYAEHGMRRTCEGILVCHEHNHPHILMLQIANAFFKLPGDYLRAEDDEIEGFKARLNER
LAPVGTQFTGEGVNDEWVVGDTLAQWWRPNFETFMYPFIPAHVTRPKECKKLYFIQLPRS
KVLSVPKNMKLLAVPLFELYDNTARYGPQLSAIPHLLSRYNFEFVDEKGNVAACTPGSGA
PDGYHPQTKVLAGGDGDDVRMEQNGDGTGSDITLS
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgtccacaatagtgaaggaagcttcccaaagctcatacccacccgtcattcccaaggac
ttcaacggtaatcaacccaagaccatccgcctgttccctctcagcaactacacgttcgga
accaaggatggccagccagaggaagatccgtctgtacttgcgcgattgaagcgactcgaa
gaacactacgcagagcatggtatgcgacgcacatgcgagggcatcctagtgtgtcacgag
cacaaccacccgcacatactcatgctgcagatcgcaaacgccttcttcaagctccccggc
gattatctccgtgccgaagacgacgagattgagggcttcaaggcaaggctgaacgagcgc
ctcgcacccgtcggtacgcaattcactggcgagggtgtcaacgacgagtgggtagttggc
gacacactggcgcaatggtggcgccccaatttcgagacgtttatgtatcccttcataccc
gcgcacgtcaccaggccaaaagagtgcaagaagctctacttcatccagcttccacgtagc
aaggttttgagcgtccccaagaacatgaaactcctggctgtcccgctattcgaactgtat
gataacaccgcacgttatggaccccaactgtcggccattccgcaccttctatcccgctac
aactttgagtttgtcgacgaaaagggcaacgtcgctgcttgcacacctggttcaggcgca
cccgacggatatcatccccaaacaaaagtcctagcaggaggagatggagatgatgtcaga
atggagcagaacggagatggtactggtagcgacatcacactctcctag
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