Pyrenophora tritici-repentis: 90954463
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Entry
90954463 CDS
T10215
Symbol
PtrM4_031090
Name
(RefSeq) RFA1, Single-stranded DNA-binding replication protein A (RPA)
KO
K07466
replication factor A1
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03030
DNA replication
ptrr03420
Nucleotide excision repair
ptrr03430
Mismatch repair
ptrr03440
Homologous recombination
ptrr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
90954463 (PtrM4_031090)
03420 Nucleotide excision repair
90954463 (PtrM4_031090)
03430 Mismatch repair
90954463 (PtrM4_031090)
03440 Homologous recombination
90954463 (PtrM4_031090)
03460 Fanconi anemia pathway
90954463 (PtrM4_031090)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ptrr03000
]
90954463 (PtrM4_031090)
03032 DNA replication proteins [BR:
ptrr03032
]
90954463 (PtrM4_031090)
03400 DNA repair and recombination proteins [BR:
ptrr03400
]
90954463 (PtrM4_031090)
Transcription factors [BR:
ptrr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
90954463 (PtrM4_031090)
DNA replication proteins [BR:
ptrr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
90954463 (PtrM4_031090)
DNA repair and recombination proteins [BR:
ptrr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
90954463 (PtrM4_031090)
MMR (mismatch excision repair)
90954463 (PtrM4_031090)
DSBR (double strand breaks repair)
HR (homologous recombination)
90954463 (PtrM4_031090)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
POT1
Motif
Other DBs
NCBI-GeneID:
90954463
NCBI-ProteinID:
XP_065966140
LinkDB
All DBs
Position
1:8047783..8049819
Genome browser
AA seq
613 aa
AA seq
DB search
MAEEAITQGAIQSIFQPGGCSVQHPVMQCVQIKPMDPKVGDSGATQRFRVVLSDIRNFIQ
TMIATSANNVVMSGQLRKGSIVRLLKYNPQRVKEKNILIIMDLEVLSQYGELEKIGQPEA
LENRPADQQPTAISGNNFYGSKPAPAPAAQAQRSLPTHQSNPGTVSHPNLYPIESLSQYA
HKWTIRARCTAKSDMKEWTNAKGAGKLFSVNLLDDTGEIRATAFTEVADKLYPVFEVGTV
YYVSAPCRVTLAKKQFSNLPNDYELQFERDTEVEKAEDQENKPQIRFNFTKIGDLSSVEK
DTTIDTIGVLKEVADVTTITSKTTNKDFSKRELTLADDSQTSVRLTIWGKTAESFDAPLE
SIIAFKGVKVSDFGGRSLSLLSSGSMMIDPDIDEAHRLRGWFDAVGQTTTFSTHQNMASA
AGGSKNDAKIISAIIEEEAYLQDTPTYMSLRASVLYVKNTTVAYPACSTQGCNKKVIEDN
PGSWWCEKCQASFPEPQYRYVLSVNVGDHTGTLWLSCFDEAGAEIVGMPANEAMKLKVDD
EENGTTNFMTAMQEATCKTFNFRVRAKMETYQDQPKPRYQVLGLHKLNYAQEANKLAQLI
KQYDLNEDSLFVN
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagaagctattactcagggtgccatccagagcatcttccaacccggcggctgc
tccgtgcagcacccggtcatgcaatgcgtacagatcaagccaatggatccaaaagtgggc
gactcgggcgcaacacagcgctttcgtgtagtattgagtgacattcgcaacttcatccag
acaatgattgcgacgtctgccaataatgttgtcatgtccggacagctcaggaaaggctcc
attgtacgactgctaaaatataacccccagcgtgtcaaggaaaaaaacatcttgatcatc
atggacctcgaggttctctcccagtacggtgagctcgaaaagattggacagcccgaagct
ctagaaaacaggcctgccgatcaacagcctaccgctatttcaggcaacaacttttacgga
tcgaagcctgcgcccgcgcctgcagcacaagcccaacgctcgcttcccacccaccagagt
aaccctggcactgtctcacatcctaacctctaccccatcgaatccctgtcgcaatacgca
cacaagtggaccattcgcgcccgttgcaccgccaagagcgatatgaaggaatggacaaac
gcaaagggagccggcaagctattcagcgtcaacttactagacgatactggcgagattcgg
gctaccgccttcaccgaagtcgctgataaactctaccccgtcttcgaagtgggtaccgtc
tactacgtctcagccccctgccgggttacgctggcgaagaagcaattttccaatctgccc
aacgactacgaactgcaattcgagcgcgacacggaagtcgaaaaggcagaagatcaggag
aacaagccacaaatacgtttcaacttcaccaagattggcgatttgagctccgtcgagaaa
gacactaccattgacacgattggcgtgttgaaggaagttgccgacgtcaccaccataacg
tcaaagacgaccaacaaggacttcagcaagcgggagttgaccttggcagatgatagtcaa
acatccgtcagactgaccatctggggcaagactgcagaaagcttcgacgctccactggaa
tccatcatcgccttcaagggcgtaaaggtttctgattttggcgggagaagtctgagtctg
ttgagctctggctccatgatgattgacccggatattgatgaggcacacaggctacggggt
tggttcgatgccgttggccagactaccacattttctacccatcagaacatggcatcggct
gccgggggctccaaaaacgacgcaaagatcatctctgccatcatagaggaggaagcctac
ctccaagacacgcccacgtatatgagtctcagggcatcagtactgtacgtcaagaacacc
acggtcgcatatcctgcctgctcaacccagggctgcaacaaaaaggtcatcgaagacaac
cccggcagctggtggtgtgagaagtgccaggctagcttcccggaaccccagtaccgctat
gtgctgagcgtcaacgttggcgatcataccggcacgctgtggctaagttgtttcgatgag
gccggtgcggaaatcgttggcatgcctgcaaatgaagcaatgaagctcaaggtggacgac
gaggagaacggcactacaaacttcatgacggctatgcaagaggccacatgcaagactttc
aactttcgtgtacgggcaaagatggagacatatcaggaccagccaaagccacgctaccag
gtgttgggcctgcacaaactcaattacgcccaggaagccaacaagcttgcgcagcttatc
aagcagtacgacctgaatgaggacagcctgtttgtcaactag
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