Pseudomonas tritici: HU722_0009580
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Entry
HU722_0009580 CDS
T07594
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ptrt
Pseudomonas tritici
Pathway
ptrt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU722_0009580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrt03019
]
HU722_0009580
03009 Ribosome biogenesis [BR:
ptrt03009
]
HU722_0009580
Enzymes [BR:
ptrt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HU722_0009580
Messenger RNA biogenesis [BR:
ptrt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HU722_0009580
Ribosome biogenesis [BR:
ptrt03009
]
Prokaryotic type
rRNA helicases
HU722_0009580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
QXH85708
UniProt:
A0A8H9YRT4
LinkDB
All DBs
Position
2141619..2143292
Genome browser
AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAF
ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGELLDRLTADIGCTPRAL
AAALLRKATNGQALTLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaacccgaacattctcgctgcc
gtcatcgcgaccggctacgaagaaccttcggcgattcagcagcaatcgatcccgatcatc
atggccggccaggacatgattggccaggcgcaaaccggtactggtaaaaccgccgcgttc
gccctgcctatcctgcactgcatcgatcctgccaagcgcgaaccgcaagccctgatcctg
gcgccaacgcgtgagttggcgctgcaagtagcaaccgcttttgaaacctacgccaagcaa
atgccaggcgttaccgttgtggccgtttacggcggcgcgccgatgggcccgcaactgaaa
gcaatccgtaacggcgcacagatcgttgtcgccaccccgggccgtctgtgcgaccacctg
cgtcgcgacgagaaagtcctgtcgaccgtgaaccacctggttctcgacgaagctgacgaa
atgttgaagctgggcttcatggatgacctggaagtcatcttcaaggcgctgccaccaacc
cgtcagaccgtactgttctcggccaccctgccacagtcgatccgtgccattgccgaacgc
cacctgcgcgatccgcaacacgtgaagatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagtgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacatcgcc
cagaaccaacgtgagcgcgtgatcgactccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgtggctgcacgtggtctcgacgttccacgtatcacccacgtgttcaacgtt
gacatgccgtacgatccagagtcctacgttcaccgtatcggccgtaccggccgtgccggt
cgcgaaggtcgtgcactgctgctggtgactccacgtgagcgccgcatgctgcaagtgatc
gagcgtgtgaccggtcagaaagtcgccgaagtccgcctgccggatgcccaggccgttctg
gatgctcgcatcaagaaactgaccaacagcctgtcgccgctggtggctgacgctgaatcg
acccacggcgaactgcttgaccgcctgaccgccgatatcggttgcaccccacgtgccctg
gctgcagccctgctgcgtaaagcgaccaacggtcaggccctgaccctggcagccatcgag
aaagaacgcccactggtgccgaacaacgcgccacgcggtgatcgtccagagcgtactggc
gaccgtccagaccgtggtgatcgtgagcgtcgtgctccggttccattggctgaaggccgt
gctcgttgccgtaccgcgctgggcgcgcgtgacggtatcgctgccaagaacctgctgggc
gctatcctcaacgagggtggcctggcacgtgaagccatcggtcgcattcaggtccgtgac
agcttctccctggtggagctgccggaagatggtctggaaaaactgctgaccaagctgaaa
gacactcgcgttgccggtaagcagttgaagctgcgtcgctaccgcgaagattga
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