Pseudomonas tritici: HU722_0011995
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Entry
HU722_0011995 CDS
T07594
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ptrt
Pseudomonas tritici
Brite
KEGG Orthology (KO) [BR:
ptrt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ptrt03016
]
HU722_0011995
Enzymes [BR:
ptrt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HU722_0011995
Transfer RNA biogenesis [BR:
ptrt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HU722_0011995
Prokaryotic type
tRNA splicing ligases
HU722_0011995
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
TFX_C
Motif
Other DBs
NCBI-ProteinID:
QXH86163
UniProt:
A0A8H9Z087
LinkDB
All DBs
Position
2674209..2675435
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AA seq
408 aa
AA seq
DB search
MQEKTYQLLEVADGKPIKLWTQGVPVEPEARQQLMNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTVGAIIPAAVGVDIGCGMIAARTTLTASDLPDNLHGLRCAIEAAVPHGRTRSRK
GRDKGAWEDVPAQADQAWTALHPRFKAITDKYPQLERSNNRQHLGTLGGGNHFVEVCLDE
ANRVWFMLHSGSRGVGNAIGNLFIQLAQADMQQHLANLPDRDLAYFEEGSQHFDDYVEAV
GWAQDFARQNRELMMRAVVQATRQVISKPFEVALEAVNCHHNYVQKERHFGEDILVTRKG
AVSAKKGELGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRTMSRTKAKNTFTLADQIRA
TAHVECRKDADVIDEIPMAYKDIDQVMHAQRELVEVLHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcaagagaaaacctaccaactgctggaagtcgccgacggcaagccgatcaaactctgg
acccagggcgtgcccgtcgagcccgaggcccgccagcaactgatgaataccgccaagatg
ccgtttatcttcaagcacctcgcggtgatgccggatgtgcacttgggcaagggttcgacc
atcggcagcgtgatccctaccgtgggcgcaatcatcccggcagcggtgggcgtggatatt
ggctgcggcatgatcgccgcgcgtaccacgctgaccgccagcgacttgcccgacaacctc
cacggcctgcgttgcgccatcgaggccgccgtaccccatggccgcactcgcagccgtaaa
ggccgcgacaaaggggcatgggaagacgtgccggcccaggccgatcaggcatggacggcg
ttgcatccgcgcttcaaggcgatcactgacaagtacccgcaactggaacgcagtaacaac
cgccagcacctcggcaccctgggcggcggcaaccactttgtcgaggtgtgcctggatgaa
gccaaccgtgtctggttcatgttgcacagcggttcgcgtggcgtgggtaacgccatcggc
aacctgtttatccagttggcccaggcggacatgcagcaacacctggcgaatttgccggac
cgcgacctggcgtatttcgaagagggcagccagcacttcgatgactacgtggaagcggtg
ggctgggctcaggatttcgcccggcagaaccgcgagttgatgatgcgcgcggtggtccag
gccacacgccaagtgatcagcaaaccgtttgaagtggcgctggaagcggtgaactgtcat
cacaactacgtgcaaaaagagcggcattttggcgaagacatcctggtgacgcgcaagggc
gcggtgtcggcgaagaagggcgagctggggattattccgggctccatgggcgccaaaagc
ttcatcgtgcgtggactgggcaacgaagagtcgttctgctcgtgcagccacggcgccggc
cgcaccatgagccgtaccaaggcgaagaacaccttcaccctggccgaccagatccgcgca
acagcccatgtggagtgccgcaaggacgccgatgtgatcgatgaaattccgatggcctac
aaggacatcgaccaagtcatgcacgcccagcgcgagctggtggaagtgcttcacaccttg
cgtcaagtggtgtgcgtcaaaggataa
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