Pseudomonas tritici: HU722_0022495
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Entry
HU722_0022495 CDS
T07594
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ptrt
Pseudomonas tritici
Pathway
ptrt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU722_0022495 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrt03019
]
HU722_0022495 (rne)
03009 Ribosome biogenesis [BR:
ptrt03009
]
HU722_0022495 (rne)
Enzymes [BR:
ptrt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HU722_0022495 (rne)
Messenger RNA biogenesis [BR:
ptrt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HU722_0022495 (rne)
Ribosome biogenesis [BR:
ptrt03009
]
Prokaryotic type
rRNA processing factors
HU722_0022495 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QXH82733
UniProt:
A0A8H9YMU8
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All DBs
Position
4945442..4948594
Genome browser
AA seq
1050 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAHSGQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPV
EAAAPVAAPAVMPEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPASERPARNEERRNGRQ
QSRNRNGRRDEERKPREERAPREERAPREERAPREAREETPVVERAPREERAPRAPRAPR
EDRKPRGEREERVRELREPLDAAPAVAGAAVVAEERPARQPREERAPREERQPRAPREER
QPRAEQAAAASEEEEVLTSEEQLQEDGQEGAEGDRPRRRSRGQRRRSNRRERQRDANGNV
IEGSEEAGENAEAATSEPTGEELAAGLAVTAAVASSVISAPAEAQAHEQAERATAAIEET
AAVEAPVAETPVVEAPVVEAPAAEAPVVEAPVVEATTPIEAPVVPEVEVAQAPEAQPEVE
VAAVEPAPVVEPQPVVEAFVEAPVVEAAPEVREVREEQTAFQWTAEPAAPVEAPAPAPVV
EEAPAPVAEVVVAEPAPVVEPAPVVEPAPVVEAPVVAEVAAPVVEAAPASALTENGRAPN
DPREVRRRRKEAEAAAAAAREAEHEPKPLV
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccaacgcctctacgacctggacatcgaatccggtgcacgcgagcaaaagaaggccaac
atctataaaggccgaattactcgcatcgaaccaagccttgaggctgcctttgtcgatttc
ggctccgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccctgaaggccgcgtgaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtc
caggtcgaaaaagaagaacgtggcaacaagggcgccgccctgaccaccttcatcagcctg
gccggtcgttacctggtgctgatgccgaacaacccacgtgccggcggcatttcccgtcgc
atcgaaggcgaagagcgcaacgaactgcgtgaagcgctgaacggcctgatcgcacccgcc
gacatgggcctgatcgttcgcactgccggcctgggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcaattgtggaccgccatcaaagaagcgtccctggatcgttcc
gcgccgttcctgatctatcaggaaagcaacgtgatcatccgcgccatccgcgattacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagctcaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctctacgaagacagcgtt
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgccttccagcgcgtggtc
gaactgccttccggcggctccattgtgatcgacccgaccgaagccctggtgtccatcgac
atcaactcggcgcgtgcgaccaaaggcagcgacatcgaagaaaccgcgctgcagaccaac
ctggaagcggcagaagaaatcgcccgccaactgcgcctgcgtgatatcggcggcctgatc
gtgatcgacttcatcgacatgaccccagccaagaaccagcgcgccgtggaagagaaagtc
cgcgaatgcctggaagctgaccgtgcccgcgtgcaagtcggccgcatctcgcgcttcggc
ctgctggaaatgtctcgtcagcgcctgcgtccatccctgggcgaaagcagcggcatcgtc
tgcccgcgttgcaacggcaccggtatcatccgtgacgttgaatcgctgtccctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagtccgcgcacaagtg
ccgattccggttgcagctttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgtgcccgtatcgtcatcctgccgaacgatcacctcgaaacgccgcacttc
gaagtgcagcgcctgcgtgatgacagcccggaagcccacagcggccagtccagctatgaa
atcgccgctgccgctgccgaagtggaagaagtccagccagccgctgcgacccgtaccctg
gttcgccaggaagctgcggtcaagacggcccctgcccgtgccaacgcaccggtacccgtt
gaagcagcagcgcctgttgccgctccggccgttatgcctgagccaagcctgttcaaaggc
ctggtgaaatcgctggtcagcctgttcgccaccaaagaagagccagccgctccggttgtg
gttgaaaaaccggcttccgagcgtcctgcacgcaacgaagagcgtcgcaacggtcgccaa
caaagccgtaaccgcaacggtcgccgtgacgaagagcgcaagccgcgcgaagaacgtgcg
ccgcgtgaagaacgcgccccacgtgaagagcgcgcacctcgcgaagcccgtgaagaaacc
ccagtggtagaacgcgcaccgcgtgaagagcgcgcgccacgtgccccacgtgccccgcgt
gaagatcgcaagcctcgtggcgagcgtgaagagcgtgtgcgtgaattgcgcgagccactg
gacgctgcgccagccgttgccggtgccgctgtcgttgcagaagaacgcccggctcgccaa
ccgcgcgaagagcgtgcgccacgtgaagaacgccaaccgcgcgctccgcgtgaagagcgt
caaccacgcgccgagcaagcggctgccgccagcgaagaagaggaagtgctgaccagcgaa
gagcaactgcaggaagacggtcaggaaggcgccgaaggcgatcgtccacgccgccgctcc
cgcggccagcgtcgtcgcagcaaccgtcgtgagcgtcaacgtgacgccaacggcaacgtg
atcgaaggctcggaagaagccggcgaaaacgcagaagccgctaccagcgagccaactggc
gaagaactggctgccggcctggccgttacggctgccgttgccagctcggttatcagcgca
cctgctgaagcccaggcccacgagcaggctgaacgcgccaccgccgccatcgaagaaacc
gccgctgtggaagcacctgttgccgagaccccagtggttgaagcgccggttgttgaagcg
cctgctgctgaagcgccagtcgtagaggcaccagttgtcgaagcgaccaccccaatcgaa
gcgccggttgtaccggaagtggaagtggcgcaggcgcctgaagctcagccagaagttgaa
gtggccgctgttgagcccgcacctgtggttgaacctcagccagtggtcgaagcgtttgtt
gaagcaccggttgtcgaagcagcgccggaagtacgcgaagttcgtgaggaacagaccgcc
ttccaatggactgccgagcctgccgctccggttgaagcgccagcccctgcccccgtggta
gaagaagcgccagcaccggttgctgaagtcgtggttgccgagcctgccccagtggttgag
cccgctccggtcgttgaacctgcgccagtcgttgaagcgccggtggttgccgaagtggcc
gctccagtggttgaagccgcaccggccagcgcgctgaccgaaaacggccgtgcaccgaac
gacccacgtgaagtgcgtcgtcgtcgcaaggaagctgaagcagccgccgctgctgcacgg
gaagcagagcacgagcctaaacccctcgtctga
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