Portunus trituberculatus (swimming crab): 123498165
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Entry
123498165 CDS
T07853
Name
(RefSeq) ATP-dependent RNA helicase me31b-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ptru
Portunus trituberculatus (swimming crab)
Pathway
ptru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123498165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptru03019
]
123498165
03036 Chromosome and associated proteins [BR:
ptru03036
]
123498165
Enzymes [BR:
ptru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123498165
Messenger RNA biogenesis [BR:
ptru03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
123498165
mRNA degradation factors
5'-3' decay
Decapping complex
123498165
Chromosome and associated proteins [BR:
ptru03036
]
Eukaryotic type
Gene silencing
piRNA pathway
123498165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
123498165
NCBI-ProteinID:
XP_045101268
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All DBs
Position
47:21390404..21411435
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AA seq
537 aa
AA seq
DB search
MADMATIPNHTSPIKPILNNQVVKSMDDKSWKSQLVLPPRDRRKRTSDVTDTKGNEFEDF
CLKRDLLMGIFEKGWEKPSPIQEASIPVALSGRDILARAKNGTGKTGAYSIPLLEQIDPT
QNHIQALVIVPTRELALQTSHICNELAKHLGVKVMVTTGGTNLKDDIMRIYEIVHAVIAT
PGRILDLMEKKVAVMDKCRMLVLDEADKLLSQDFKGMLDRVISYLPPERQILLYSATFPL
TVEQFMKKHLRSPYEINLMDELTLKGVTQYYAFVQERQKVHCLNTLFSKERTLGVSTIEQ
LHCNFQRKQKTMRRKDYLAKIPKEKLQYIKSVYKDLANPNLLKRCLKGATQNPNESIHAK
VWNRYSKTKFCGHTRLLFIVKHTPVQHNFGYEGANIISHLLGTDTRLHETMKFLDQERAR
HATPKLKKALQKKDDSLSGWRSPDLFTRGIDIQAVNVVINFDFPKMAETYLHRIGRSGRF
GHLGIAINLITYDDRFALHRIEQELGTEIKPIPKVIDPALYVAEHHFEEDDEGNISK
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atggcagacatggcgaccatccccaatcacacctcgccgatcaaacccatacttaataac
caggtggtgaaatctatggatgacaaatcctggaagtcccagctggtgcttcctccaaga
gacagaaggaaacgaacatcagatgtgacagacactaaaggcaatgagtttgaggacttc
tgtttgaagcgggacttattgatgggtatctttgagaaggggtgggagaagccgtccccc
atccaggaggcctctatccccgttgccctaagtggaagagatattttggctcgtgccaag
aatggcactggaaagacaggggcatactcaatcccccttctggaacagattgaccctact
cagaaccacatccaagctctggtcattgtgcccacacgagaactggctctgcagactagt
catatttgcaatgagttagccaaacatttaggtgtcaaggttatggtgacaactggagga
actaatttaaaggatgacatcatgagaatctatgaaatagtgcatgcagtgattgccact
cctggtagaatccttgacttgatggagaagaaggttgcagttatggataagtgccggatg
ttggtattagatgaggctgacaaactcttgtcccaggatttcaaaggcatgttggacagg
gtgatctcttacctacctccagagcgacagatccttctctattctgctacgtttcctctt
actgtggagcaattcatgaagaagcatctgagatctccatatgaaatcaacctgatggat
gagctaaccctgaaaggagtgacacagtactatgcatttgtccaagaacgacagaaagtc
cactgcctaaataccctattctcaaaggagaggactcttggtgtttctaccatagagcaa
ctgcactgcaacttccagaggaagcaaaagaccatgagaagaaaagactaccttgccaaa
attcccaaggagaaactgcagtacatcaagtctgtgtacaaagaccttgcaaatccaaac
cttctcaagaggtgcctgaagggtgctacacaaaaccctaacgaatccatccatgcaaag
gtttggaataggtacagcaaaacaaaattttgtggccacacaagacttctcttcatagtc
aaacatacacctgttcaacacaactttgggtatgaaggagcaaatatcatttcacatctc
cttgggactgacacaagattgcatgaaacaatgaagtttttggaccaagaaagagccaga
catgcaacaccaaagttgaagaaggcactgcaaaagaaagatgactctttatcaggctgg
agatctccagacttgtttacaagaggtatagacatccaagctgttaatgtcgtcataaac
ttcgacttccccaagatggccgaaacttacttgcacaggattggtagatcaggacgcttt
gggcatcttggcattgccatcaacctgataacttacgacgatcgctttgctctgcatcgc
attgagcaggagctaggcacagagatcaagcctatccccaaggtcattgatcctgctttg
tatgttgcggagcatcactttgaagaggatgacgaaggcaatatcagcaagtaa
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