Portunus trituberculatus (swimming crab): 123499685
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Entry
123499685 CDS
T07853
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ptru
Portunus trituberculatus (swimming crab)
Pathway
ptru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123499685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptru03019
]
123499685
Messenger RNA biogenesis [BR:
ptru03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123499685
mRNA degradation factors
5'-3' decay
Decapping complex
123499685
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
123499685
NCBI-ProteinID:
XP_045104006
LinkDB
All DBs
Position
50:22160563..22170887
Genome browser
AA seq
904 aa
AA seq
DB search
MDSDGFFEFDASLPPEDGAVEGGHEDEEYDALNDETFGSAAVVDGDWEESHQHLASITEA
NRHSTKLQNESALLNELQQLRLGNVGGYDGPTSAPISIRGYQGGPHIGSSLLSGPDLPGS
PSNSIWTPSPGVDRLQPMGTPPPVGSLPSSAPLGLPSVKTVAELEQEMKLQSARTQPSLP
LQPPLRAEDLEKELARHSVTKGPNQGPQSHHWPSFQRPPGLNQANMYQWQMQQQQFSQRQ
QQQQQQQQHPRFMNTYPGGSGGGGSGSNNKSVFSQPHAMQSGPGGSQHHPQHTHHNHEGG
SNNFIHPHGPPHPPHHHHHQQQQQQQQQPQPHSQHHSNQQQSQQQQQQQHHHHHNNPPPS
HHSHHQHQPPHHHHLQQQHHHNYNNSNNNNNNFNNQHHHHHQQHHHQHQSHHPPHHHHHH
HSHHQPPGYGYHHNNRGQDGNYFNHNGSESQGRGSYERWGYDRRPYDQRGGQYERKGWDD
HGSQHPSRTRRDSEAEWEEWHRCREQDEYSCLMTPREKGWLKHIQAMQLHSDTPYRDDYY
YVMHSVKQQRKREEEVIEIDGLQLLLPDRGKDGASGREYEPPHLENSLGKLQVVSVNAPR
KIIDLQVVHLDPSHPTTSMQREMRRHRHLLLYVEKLFNTMMELDDLERRIRHLPDCPTRD
MFRSKSRTLSARLWANLNASPDRLLQVLCIRKGKSLVSRLLGWLGEGDQERLVVTLLQNM
TVLSRKDAHDQHLALLWPATDRLVATAAPNRLLELAAAFNNNSSAQVPSQKTNLAAALYN
KYGVSLVLALLVRGEQVHAVLVDSNVWQEFLSAIIAALATTTSSPANEGAIPKTTTSSST
DSNKNEMAAALPSVALAASPCRPGQHLARCVGVEANLLKAAQDKMAQMEATHSKASRSQS
PTKS
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atggactccgacggtttcttcgaatttgacgcctcgttaccgcctgaagatggggcggtg
gagggagggcatgaggatgaggagtacgacgccctcaacgatgagacatttggctcggca
gcggtggtggacggtgactgggaggagagccaccagcacctggcctccatcactgaggct
aaccgccactctaccaagcttcagaatgagagtgcacttttgaatgagctacaacagctg
aggctgggaaatgtgggtggctatgatggccccactagtgcccccatctctattaggggg
tatcaaggggggccccatattggctcttccctcctgagtggtccagacctgccagggtct
ccgtccaacagcatctggaccccttcccctggtgtggacaggcttcagcctatgggcaca
cccccaccagtgggcagcctgccctcctcggcccctcttggcctgccctcggtgaagact
gtggctgagctagagcaggagatgaagctgcagtcagccaggacacaaccgtccctcccg
cttcagccaccactaagggctgaggatctagagaaggagttggcccgacactcagttacc
aagggtcccaaccagggtccacagtcccaccactggccctccttccagcgaccaccaggc
ctcaaccaagcaaacatgtaccagtggcaaatgcagcaacaacagttttcacaaagacaa
caacagcagcagcagcaacagcagcaccctcgcttcatgaacacataccctggaggcagc
ggtggtggtggcagtggcagcaacaacaagagtgttttcagtcagccacatgccatgcag
tctggcccaggaggctcccagcaccacccccaacacacccaccataaccatgaaggtggc
tccaacaacttcatccatccccatggacccccacaccctccccaccaccaccaccaccaa
cagcagcagcagcaacagcagcagccacagccacacagccaacaccacagtaaccaacag
cagtctcaacaacagcagcagcaacaacaccatcaccaccacaacaacccccctccttcc
caccactcccaccatcaacaccagcccccacaccaccaccatttacagcaacagcatcat
cacaactacaataacagtaataacaataacaacaactttaacaatcaacaccaccaccac
catcagcaacaccaccaccagcaccagtcccaccaccctccacaccaccaccaccaccac
cactcacatcaccagccgccagggtatggttaccaccacaacaatcgggggcaggatggt
aactacttcaaccacaatgggtcagagtcacagggacgcgggtcttatgagcgctggggc
tatgaccgacgcccgtatgaccagagaggagggcagtatgaacgcaagggttgggatgat
catggttcccagcaccccagccgcaccaggcgagacagcgaggctgagtgggaggagtgg
caccgctgccgggagcaggacgagtatagctgtctcatgaccccaagggagaaggggtgg
ctcaagcacatccaggccatgcagctccattctgacaccccctacagagatgactactac
tatgtgatgcacagtgtgaaacagcagcgcaagagagaagaggaagtgatagagatcgat
ggactccagctcttgttgccagaccgtgggaaggatggtgcctctggccgggaatatgag
cctccccatcttgagaattctcttggcaagctacaagtagtgagtgtgaatgccccaagg
aagattattgaccttcaggtggtgcacctggatccctcacacccaaccacctccatgcag
cgagagatgaggagacacaggcacctcctcctttatgttgaaaagctgttcaacacaatg
atggagctggatgacctggagcgccggatccgccacctgccagactgccccactagagat
atgttccgatccaagtcccggacgctgtcggcacggctctgggctaacctgaacgccagc
cctgatcgcctcctgcaagtcctgtgcattcgcaagggaaagagtcttgtgagtcgcctg
ctgggctggcttggagagggagaccaggagcgtctggtagtgacactactgcagaatatg
acagtgctgtctcgcaaggatgcccatgaccagcacctggctcttctctggcctgccact
gatcgcctggtggctactgctgcccctaaccggcttctagagttggctgctgctttcaac
aacaattcttcagcccaggtcccctcccagaagacaaacctggcagcagcactctacaac
aagtatggggtgagcctggtgcttgccttgttggtacgtggggagcaggtccatgctgtg
ctggtggactccaatgtctggcaggaatttctttcggccatcatcgcagccttggccacc
accacatcatcccctgccaatgagggtgccattcccaagaccacgacctcctcctccact
gactccaacaagaatgaaatggcagcggcgcttccatcagtggcccttgctgcttcaccc
tgccggcctggccagcacctggctcgttgtgtgggtgtggaagccaacctcctcaaggcc
gcccaggacaaaatggctcagatggaggccacccactccaaagcatctcggagccagagt
ccaacaaagtcttaa
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