KEGG   Portunus trituberculatus (swimming crab): 123502548
Entry
123502548         CDS       T07853                                 
Name
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ptru  Portunus trituberculatus (swimming crab)
Pathway
ptru03030  DNA replication
ptru03410  Base excision repair
ptru03420  Nucleotide excision repair
ptru03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ptru00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    123502548
   03410 Base excision repair
    123502548
   03420 Nucleotide excision repair
    123502548
   03430 Mismatch repair
    123502548
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ptru03032]
    123502548
   03400 DNA repair and recombination proteins [BR:ptru03400]
    123502548
Enzymes [BR:ptru01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     123502548
    6.5.1.6  DNA ligase (ATP or NAD+)
     123502548
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     123502548
DNA replication proteins [BR:ptru03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    123502548
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     123502548
DNA repair and recombination proteins [BR:ptru03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     123502548
   NER (nucleotide excision repair)
    Other NER factors
     123502548
   MMR (mismatch excision repair)
    Other MMR factors
     123502548
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C HVO_A0114 eIF-3c_N PucR
Other DBs
NCBI-GeneID: 123502548
NCBI-ProteinID: XP_045107616
LinkDB
Position
12:complement(7014758..7034436)
AA seq 708 aa
MKKEKEEKEDEEKSEGVKKEEKEEEKKEEKKAEIKKTFVNPFSQKAPGSGDPGADYDPRK
AKYHPVKDAFWQKGQKMPYLALAKTLEAIEETSGRLKIVEILANFLRSVIVLSPDDFLFC
VYLCLNKVAPAFEGLELRIGDTILIRAIAQASGRSPEKIKADAERLGDLGIVAEQSRTNQ
RVMFQPAKLTVAGVFKKLKEIALMTGHASQAKKIDLVKGMYVACRFCEAKYLVRSLGGKL
RIGLAEQSVLMAIAQACYLTPPGQEYPPEVVDAGAGRNPDKLKAEIDEYALILKTTYCEF
PSYDEIIPVLLKEGLKKLPEHCKLTPGVPLKPMLAHPTTGVSEVLKRFDNAKFTCEFKYD
GERAQIHMKEDGTINIYSRNQEDNTSKYPDIISRFKNSLGEGVKSCVVDSEAVAWDRNKN
RILPFQILSTRKKKDARESQITVQVCVFPFDLLYLNGEPLVREPFEKRRALLRENFNEVE
GEFVFATSMDATNTEDIEEFLEESIKGNCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYL
DGVGDTIDAVVIGGYLGKGKRAGLYGGFLLACYDVENEEYQSLCKIGTGFSDEDLAKHTE
FFKQHIIENPKSYYRYDNAVAPDHWFDAVQVWEVKCADLSISPVHKAGQGIVDPEKGISL
RFPRFLHIRDDKNPEDATSANQIAELYRNQEQIKTSKTKSAGDDDDFY
NT seq 2127 nt   +upstreamnt  +downstreamnt
atgaaaaaggaaaaagaggaaaaagaagatgaggaaaagagtgaaggggtgaagaaggaa
gagaaggaggaggaaaagaaggaagagaagaaggcggagattaaaaagacatttgttaac
ccgttctctcaaaaggcgccaggcagcggtgaccctggcgctgactatgacccaaggaag
gcaaagtaccatccagtcaaggacgcattttggcagaagggtcagaagatgccgtacctg
gccctagcgaaaaccctggaggccatcgaggagaccagtggccgcttgaagatagtggag
atcctggccaacttccttcgttctgtcattgtgctgtcccccgatgacttcctgttttgt
gtctacctgtgtctcaacaaggtggcgccagcttttgaaggtctggagctaaggattggg
gatactattctcatccgcgccattgctcaagcctcgggtcgcagtccggagaagatcaag
gcagatgcagagaggctgggtgacctgggcattgtggcagagcagtcccgtaccaaccaa
agggtcatgtttcagccggccaagctcacagtggctggagtgttcaagaagctgaaggag
attgctcttatgactggccatgcttcccaggcaaagaagatagacctagtgaagggaatg
tacgtggcatgccgtttctgtgaggccaagtacctggtgcgctccctcggtggaaagctg
aggatcggattggcggagcagtctgtcctgatggctattgcccaggcctgctacctcaca
ccccccggccaggagtacccgcctgaggtagtggatgcaggagccggccggaaccctgac
aaattgaaggcggaaattgatgaatatgctctcatcctcaagactacttactgcgagttt
ccttcctacgatgagattataccagtgctgctgaaggaggggctgaagaagctgccggaa
cactgcaagctgacccctggcgtgccccttaagcccatgttagcccaccccaccactggc
gtctcagaggtgctcaaacgcttcgataatgccaagtttacatgcgaatttaagtacgat
ggggagcgagcacagatccacatgaaggaggacggaaccatcaacatctacagccgcaac
caggaagataacacctcaaagtaccccgacatcatctcccgcttcaagaactctctgggc
gaaggtgtcaagtcctgcgtggtggactcagaggcagtggcgtgggacaggaataagaac
cgcatcctccccttccaaattctcagtacgcggaagaagaaggacgccagagagagccag
atcacggtgcaggtgtgtgtgttccccttcgacttgctgtacctcaatggggagccgctg
gtgcgcgagccgtttgagaagagacgggcgttgctgcgggagaatttcaatgaggtggag
ggcgagtttgtctttgccacgagcatggacgccaccaacaccgaggacattgaggagttc
ctggaggagtcaattaagggtaactgtgagggtttgatggtgaagacgctggatgtcgat
gccacgtatgagattgccaagcgctcccacaactggctcaagctgaagaaggattacctg
gatggggtgggtgacacaattgatgcagtggtgataggaggatacctgggcaaaggcaag
agggctgggctgtatggtggcttcctgctggcttgctacgatgtggagaatgaagaatac
cagtccctctgtaagattgggacaggtttctctgatgaggacttggcaaagcacactgag
ttctttaagcaacatatcattgagaaccccaaatcctactacaggtatgacaatgcagtg
gcgcctgatcactggtttgacgcagtgcaggtgtgggaggtgaaatgtgctgacctctcc
atttctcccgtgcacaaagctggccagggcattgtggacccagagaagggcatctccctc
aggttcccacggttcctccacatcagggacgacaagaaccctgaggatgccacgtctgcc
aaccagattgctgagctgtacaggaatcaggaacagatcaagacaagcaagaccaagagt
gctggtgatgatgatgacttctactag

DBGET integrated database retrieval system