Portunus trituberculatus (swimming crab): 123503532
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Entry
123503532 CDS
T07853
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ptru
Portunus trituberculatus (swimming crab)
Pathway
ptru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123503532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptru03041
]
123503532
Enzymes [BR:
ptru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123503532
Spliceosome [BR:
ptru03041
]
Complex C
Other components
Step II factors
123503532
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
GIPC1_GH2
DEAD
AAA_22
AAA_19
PWI
nSTAND3
nSTAND_NTPase5
AAA_16
PhoH
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
123503532
NCBI-ProteinID:
XP_045109306
LinkDB
All DBs
Position
14:complement(4006199..4264420)
Genome browser
AA seq
1274 aa
AA seq
DB search
MDDLFKLEKLSLVSKICVELENHLGINDKDVAEFIISLAEANKRLDKFKKALEENGGDQF
ADSFVESLWRLIQHMMPSLTSSSSISIKEDDKPKTEKDKKREMLPFLALPNDPKVIHMLD
DELKPSIKNKEEISQKSKIKEKERDEEWNIRKLKKNEKELEKTELKKEKITKKESEMEMD
NLMAFLESHAPSKQTEKASNQAKERKRRSSRSHSRERRRSRSPRKHKRRRERSHSRGRDR
RRSHSRERRSHSNSRERNDDGYEKRHGREKHGNRKDRHRRDRSRSLSKDAHRSRSQVRNS
HSTSNRDVFISRPPDENPVVGKVYEGKVTNILNFGCFVQLEGLRRRLEGLVHISQLRREG
RVTNVSDVVVRGQKVKVKVLSFTGQKTSLSMKDVNQETGEDLNPNVAPVGISNMEEDSMR
NPDRPMSLMELTKGTDEEDLATYKRVNRISSPERWELKQMMAANCISKSEMPDFDEEQGV
MGGEDDDEEDVEIELVEEEPAFLRGYGRVREELSPVRIMKNPDGSLAQAAMMQSALAKER
REVKMAQRESEMDSQPSNLGQNWNDPLPEIQRSDSAMSRGLTSQQQEVPEWKRHITGGTR
GSYGKKTNMTILEQRQSLPIYKLRDELIKAIDGNQILIVVGETGSGKTTQITQYLAEAGF
TAKGKIGCTQPRRVAAMSVAKRVSEEFGCRLGQEVGYTIRFEDCTSSETVIKYMTDGMLL
RECLIDPDMSSYACIMLDEAHERTIHTDVLFGLLKQAVAKRPELKLIVTSATLDAVKFSE
YFNQAPIFTIPGRTFPVEILYTREPETDYLDAALITVMQIHLSEPPGDILVFLTGQEEID
TACELLYERMKALGSDVPELIILPVYSALPSEMQTRIFEPAPPGSRKVVIATNIAETSLT
IDGIYYVVDPGFVKQKVYNPKTGMDSLMVTPVSQAGAKQRAGRAGRTGPGKTYRLYTERA
YRDEMLPTSVPDIQRTNLASTVLQLKAMGINDLLGFDFMDPPPTDAMVMALETLHSLSAL
DDEGLLTRLGRRMAEFPLEPNLAKMLIMSVHLQCSDEILTIVSMLSVQNVFYRPKEKQAL
ADQKKAKFNQAEGDHLTLLAVYNSWKNNKFSNAWCYENFVQMRTLKRAQDVRKQLLGIMD
RHKLDVVTCGKNVARAQKTICSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPE
WVVYHELVQTTKEYMREVTTIDPKWLVEFAPSFFKLGDPTKLSKYKKNQRLEPLYNKYEE
PNAWRISRVRRRRN
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atggatgacctttttaagcttgagaagctttccctggtttcaaagatatgcgtggaactg
gaaaaccatttaggaatcaacgataaagatgttgctgagttcattatttctcttgctgaa
gccaacaaacgccttgacaaattcaagaaagcacttgaagaaaatggaggtgaccagttt
gcggattcgtttgtagagagcctatggcggctgatccagcacatgatgccgtctcttaca
tcttcttcttctattagtattaaagaagatgataaacctaaaacagaaaaagataaaaaa
cgagaaatgttgccttttctagccctacctaatgatcccaaagtcattcatatgttggat
gatgaactcaagccttcaattaaaaataaggaagagataagtcaaaaaagtaaaatcaaa
gaaaaagaaagagatgaggaatggaatattcgtaaattaaagaaaaatgagaaggaactc
gaaaagactgaactgaagaaggaaaagattacaaagaaagagtctgaaatggagatggat
aatctgatggcctttttagagtctcatgctccatcaaagcaaacagagaaggcaagtaat
caggccaaggagagaaaaagaagatcaagtcgcagccacagtagagagcgcaggaggtcc
aggagtcccaggaaacacaagaggagaagggagcgaagtcacagccgtggaagagacaga
cgaagaagtcacagtagagaaagacgaagccatagcaacagtagggagagaaatgatgat
ggttatgagaagaggcatggtagagagaagcatgggaacagaaaggaccgacacaggaga
gacagaagtcgatctctcagcaaggacgcccacagaagtagaagtcaagttaggaatagt
cacagcacaagtaatagggacgtgtttatcagccgtcctccagatgaaaatccagtcgta
ggaaaggtttatgaagggaaggtaacaaacatcttaaactttggatgttttgttcaacta
gaagggctacggaggaggctggaaggccttgtgcacatttcacagctacggagagaagga
cgtgtcaccaatgtatcagatgttgtcgttcgaggacaaaaagttaaggtgaaggtgctg
tcattcactggacagaagacttctctgtcaatgaaagatgttaatcaggagacaggagag
gacctcaaccctaatgtagcacctgtagggattagcaacatggaagaagactccatgaga
aatccagacagacctatgtctctcatggaactaactaaaggtactgatgaagaagatctt
gcaacatacaagagggtcaaccgaatatcctctcctgaacgatgggaattaaagcagatg
atggcagcaaactgtatcagtaagtcagaaatgcctgactttgatgaggaacagggagtg
atgggtggtgaagatgatgatgaggaagatgtggaaattgagctggtagaagaagaacct
gcatttttgcgaggttatggcagagtgagggaagaactgagtccagtcaggataatgaag
aatcctgatggctccttagctcaagcagcaatgatgcaaagtgccctagctaaagaaaga
agagaagttaagatggcccagagggaaagtgaaatggattctcaaccttcaaatcttggg
caaaattggaatgatcctcttcctgagatccaacgcagtgattctgccatgtcacggggc
ttgacatctcagcagcaagaagtccctgaatggaagagacacatcacaggtggaaccaga
ggatcatatggaaaaaaaacaaacatgacaatattggagcagcggcaaagcctacccatt
tataaactaagagatgaactgatcaaagccatagacggtaatcagattctcattgttgtt
ggagaaacaggctcagggaaaaccactcagattacccaatatttggctgaagcaggattt
actgccaagggcaaaataggttgtactcagccaaggcgagtggctgccatgtcagtggca
aaaagagtctcagaagaatttggttgtcgacttggtcaagaagttggctacactatccgt
tttgaggactgcaccagctcagagacagtaataaaatatatgacagatggtatgttgttg
agagagtgtctcattgatccagacatgtcaagctatgcttgcatcatgttggatgaagct
catgaaaggactattcatactgatgtattgtttggccttttgaaacaggcagtagctaag
aggccagaactaaaactgattgttacttctgctactttggatgctgtaaagttttccgaa
tacttcaaccaggccccaatcttcactatacctgggcgaacatttcctgttgagatcctc
tacacacgagagccagaaacagattatctagatgcagccctcatcactgtcatgcagatt
cacctgtctgaaccacccggagatattctagtttttctcactggccaagaggagattgac
actgcttgtgagctgttgtatgaacgaatgaaagcacttggaagtgatgtgcctgagctt
ataatcttgcctgtctattcagccctcccttcagagatgcaaacaaggatctttgagcct
gcacctccaggatccaggaaggtagtgattgctacaaacattgctgagacatccctaacc
attgatggcatctattatgttgtggatccaggatttgtgaagcagaaagtttacaatcca
aagacgggaatggattcactgatggtgacaccagtatctcaggcaggagccaagcagcga
gcaggtcgtgctggacgtactgggccaggcaagacgtatcggctctacactgagagggct
tacagagatgagatgttgcccacaagtgtaccagacatccaaagaactaacttagcatca
acagtgctccagctgaaagcaatgggaataaatgatcttttaggttttgactttatggac
ccgccacccacagatgccatggttatggcactagaaacacttcactctctcagtgccctg
gatgatgaaggactgctaactcgacttgggagacgaatggctgagtttcctcttgagccc
aaccttgccaaaatgttgatcatgtcagttcacttacagtgctcagatgagatccttacc
attgtctctatgctgtctgtacaaaatgtattctacaggccaaaggaaaaacaagccctg
gctgatcagaagaaagcaaagtttaaccaagcagaaggcgatcacctcactctactggct
gtttacaactcttggaagaataacaagttttcaaatgcctggtgctatgaaaattttgtc
caaatgagaacattaaaaagggcacaggatgtaaggaagcaactattgggcattatggac
agacacaagttggatgtagtaacttgtggcaagaatgttgctcgggcacagaagactatc
tgctcaggattcttcagaaatgctgccaagaaggacccacaggaaggttaccggactctg
gttgattcacaggtggtttatattcacccatcatcagctcttttcaatcggcagcctgaa
tgggttgtgtatcatgagctagttcaaactactaaggaatacatgagggaagtgacgacc
attgatcccaagtggctggtggaatttgcaccatcattcttcaaattaggtgatcctacc
aagcttagcaagtacaagaagaaccagagactggaacctctatataataaatatgaagaa
cccaatgcctggagaatatctcgtgtgaggcgaagaagaaactga
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