Portunus trituberculatus (swimming crab): 123506386
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Entry
123506386 CDS
T07853
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ptru
Portunus trituberculatus (swimming crab)
Pathway
ptru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123506386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptru03019
]
123506386
Enzymes [BR:
ptru01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
123506386
Messenger RNA biogenesis [BR:
ptru03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
123506386
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
Motif
Other DBs
NCBI-GeneID:
123506386
NCBI-ProteinID:
XP_045114409
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All DBs
Position
19:complement(8725874..8754803)
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AA seq
603 aa
AA seq
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MEVTTENFKEVLPSILQAVERADFIAIDAEFTGLRRRETSRYCELDTIEERYIKAREAAK
DFGMIQFGISAFRYIKEKSSYSHATFCFYLLGKTGDMLYYDNSSLKFLADNGFDFNKLFK
SGLPYLSILEEAEKRGEFVSQALEPFPPSPVKVAEEKARKFLKETEEKIDALLEDESQEV
LVLPGGTLPGFFRKLLYNNIAAKYKNILIRSLTTDQERNIEIRKFDSPEARLKFLEEERE
RKLDEKVGFTHVIRKVLESGKPLVGHNMMLDLLHLIQKTVQPLPDTLEQFKNVVKANLPT
IYDTKLLAKDPPFCVDIPITSLGILYSELCGKFNPPDFIVEEGYESHSLDRHGQAHDAGY
DAFMTGVCFITMVKKLDGSNWKNKSVIRSKHLSQFSSRLNNMNSHDIPFLNLVGPDVQTD
RSRIFCVDCPAEWNVGNVHGLFNMMKPIKIVWMSSTFLYVIPPEDIDTSGCKQYLKGIQA
SCPPMVRVRLYGDTLSVKRKSQSDDIPPGVEPSASRVHEYKRLKSVGSDQLSKMTLESPS
MEEVPPIYANASDNGKRMKTDQDAATDGVFAIPDEWCEISDREGRPHIVPLVLALFIFFK
WFW
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcaccactgagaatttcaaggaagttcttcccagcatcctccaagcagtggag
agggcagattttatagctattgatgcagagttcactggtctgcggcgcagggaaacctca
agatactgtgagcttgatactattgaggaaagatacatcaaagctcgtgaagcagcgaaa
gactttggaatgattcagtttggaatatcagcctttcgttatataaaggaaaaatcatcg
tattcacacgccactttctgcttctatctgctggggaagactggagacatgctgtattat
gacaactctagcctgaagttcctagcagacaatggatttgatttcaacaaattatttaaa
agtggattaccttacctttcaatactggaggaagcagagaaaagaggagagtttgtcagt
caggcactagaaccattccctccctcaccagtaaaggttgcagaagaaaaggcaagaaaa
tttttgaaagagacagaagaaaaaatagatgccctcttagaagatgaaagtcaagaggtt
ttggtgctcccaggtggaacattgcctggatttttccgcaaactactgtataataatatt
gctgccaaatataaaaacattctcatacgcagtctgacaactgaccaggagaggaacatt
gaaatccgtaaatttgactctcctgaagccagattaaagtttttggaggaggaaagggaa
agaaaattggatgaaaaggtgggcttcactcacgtgatccgcaaggtgctggagagtggc
aagcctctggtgggccacaacatgatgctggacttgctacacttgattcagaagacagtg
cagcctttgcctgataccttagagcagttcaagaatgttgtcaaggcaaaccttcccact
atctatgacaccaaactccttgccaaggatccaccattctgtgttgacattcccatcacc
tcacttggcatcctgtacagtgaactctgtggtaaattcaatccaccagacttcattgtt
gaagaaggatatgagagtcacagcctggacaggcatggccaggcgcatgatgcagggtat
gatgccttcatgacaggcgtgtgcttcattaccatggtgaagaagctggatggcagcaac
tggaagaacaagtctgtcatcagatcaaaacatttgtctcaattttccagcagattgaat
aacatgaactcccatgacattcctttcctcaacctggtgggtccagatgttcagacagac
agaagccgaatattttgtgtggactgtcctgcggagtggaatgtgggcaatgttcatgga
ctttttaacatgatgaaacccatcaagatagtgtggatgagcagcactttcttgtatgtt
attcctcccgaagacattgacaccagtggctgcaaacaatacctcaagggcatccaggca
tcttgtccccctatggtgagagtgaggctgtatggtgacactttgtcagtgaaaaggaaa
tctcagtctgatgatataccaccaggagttgagccaagcgctagccgtgtccacgagtac
aagcggctgaagagcgttgggtcagaccagctttcaaagatgacactcgagtcccccagt
atggaagaagtccctccaatatatgccaatgccagtgataatggaaagaggatgaagaca
gaccaagatgctgccactgatggggtgtttgccataccagatgaatggtgtgagatatca
gacagggagggaagaccacatatagtacctttagtgttagctttgtttatcttttttaag
tggttttggtaa
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